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OP009268.1__UUV43180.1__RCCWILLIS_8__00008

Bact-Vir

OP009268.1__UUV43180.1__RCCWILLIS_8__00008

Identity

Accession:
OP009268 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Rhodobacter_phage_RcCWillis

TaxID: 2970510

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 82-148
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 48.0 3.11e-01 82.1% 52.4%
2af0A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.61 42.0 4.01e-01 71.6% 85.0%
1tvlA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.60 41.0 2.48e-01 70.1% 44.9%
6tblB01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 40.0 3.36e-01 70.1% 62.2%
2vsoF01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 41.0 2.80e-01 71.6% 37.2%
1iduA02 1.10.606.10 Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 0.58 50.0 3.10e-01 98.5% 29.2%
4o92A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 42.0 3.59e-01 76.1% 77.1%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.77e-01 80.6% 55.3%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 49.0 3.30e-01 100.0% 33.3%
4k35A03 1.10.287.1170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › glycoside hydrolase family 81 endo-[beta] glucanase 0.57 38.0 3.83e-01 85.1% 67.1%
2z86D01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 40.0 2.57e-01 74.6% 85.0%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.56 43.0 4.60e-01 97.0% 96.6%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.56 36.0 3.54e-01 74.6% 60.3%
5ot1A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 41.0 2.71e-01 98.5% 76.8%
7xb6B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 3.05e-01 94.0% 75.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500715 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.76 51.0 4.82e-01 70.1% 72.5%
3786647 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.68 47.0 4.41e-01 97.0% 58.7%
3369845 3379.1.1.2 ↗ extended segments › Photosystem II reaction center protein ycf12 › Photosystem II reaction center protein ycf12 › Photosystem II reaction center protein ycf12 › DUF3339 0.60 46.0 4.68e-01 83.6% 86.2%
3499366 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 43.0 2.31e-01 77.6% 11.0%
3501802 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.57 41.0 3.24e-01 76.1% 51.4%
3346499 109.4.1.46 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.57 39.0 3.09e-01 71.6% 57.8%
3369981 109.4.1.1477 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, TPR_IMB1 0.56 41.0 2.78e-01 76.1% 35.0%
3995010 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 39.0 3.06e-01 70.1% 65.7%
3287340 234.3.1.1 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › Colicin_D 0.56 41.0 3.74e-01 80.6% 56.8%
3243608 5001.1.1.54 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc 0.54 46.0 3.11e-01 98.5% 33.6%
3227498 5001.1.1.54 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc 0.54 45.0 3.12e-01 98.5% 35.8%
3211500 5001.1.1.54 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc 0.54 46.0 3.08e-01 98.5% 33.3%
3991307 2498.1.1.112 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1, TAF2_3rd 0.54 44.0 2.85e-01 98.5% 48.7%
3239967 5001.1.1.54 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc 0.53 45.0 3.04e-01 98.5% 33.9%
3499325 576.1.1.1 ↗ few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin 0.53 42.0 3.37e-01 88.1% 90.6%
4319905 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.52 43.0 2.96e-01 97.0% 72.3%
3945327 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.51 41.0 2.89e-01 97.0% 50.2%
3250198 604.1.1.119 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › ORMDL 0.51 35.0 3.12e-01 71.6% 75.0%
3222472 5001.1.1.54 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc 0.51 43.0 2.94e-01 98.5% 34.6%