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OP009268.1__UUV43264.1__RCCWILLIS_92__00092

Bact-Vir

OP009268.1__UUV43264.1__RCCWILLIS_92__00092

Identity

Accession:
OP009268 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-53
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.78 67.0 5.58e-01 94.0% 97.6%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.78 62.0 4.41e-01 100.0% 29.7%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.76 66.0 5.03e-01 100.0% 72.9%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.72 59.0 4.25e-01 100.0% 30.9%
6c80A03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.71 62.0 4.04e-01 100.0% 42.9%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.68 52.0 4.14e-01 100.0% 38.9%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.68 53.0 4.09e-01 100.0% 38.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.67 53.0 4.47e-01 100.0% 50.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 53.0 4.37e-01 100.0% 48.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 49.0 3.92e-01 100.0% 40.8%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 44.0 3.86e-01 100.0% 44.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 54.0 3.86e-01 100.0% 43.7%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.65 49.0 4.98e-01 100.0% 88.0%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 48.0 3.78e-01 100.0% 38.1%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.64 47.0 3.67e-01 100.0% 34.2%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 54.0 3.92e-01 100.0% 36.7%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.63 53.0 3.46e-01 100.0% 29.5%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.63 52.0 3.45e-01 100.0% 22.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 54.0 4.26e-01 100.0% 86.2%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.63 52.0 3.80e-01 94.0% 75.7%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 50.0 4.42e-01 100.0% 87.1%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 53.0 4.33e-01 100.0% 90.8%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 47.0 2.98e-01 90.0% 16.1%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 49.0 3.58e-01 92.0% 73.5%
1odmA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.61 47.0 2.92e-01 88.0% 65.0%
2mp4A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 49.0 3.60e-01 100.0% 35.8%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.60 49.0 4.00e-01 100.0% 44.6%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.60 51.0 4.04e-01 100.0% 53.2%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 39.0 3.01e-01 100.0% 27.6%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.33e-01 100.0% 34.2%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 48.0 3.72e-01 98.0% 99.2%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 3.72e-01 100.0% 55.6%
2kz6A01 6.10.140.1310 Special › Helix non-globular › Helix Hairpins › 0.57 45.0 3.78e-01 84.0% 61.7%
2kl5A00 3.50.4.20 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 0.57 46.0 3.79e-01 100.0% 46.4%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 49.0 3.86e-01 100.0% 60.2%
1nepA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 3.62e-01 100.0% 45.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 43.0 3.88e-01 100.0% 59.2%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.56 47.0 3.63e-01 100.0% 60.2%
6jebA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.55 43.0 3.77e-01 86.0% 74.7%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 45.0 3.66e-01 100.0% 97.2%
1g13A00 2.70.220.10 Mainly Beta › Distorted Sandwich › Ganglioside M2 Activator Protein; Chain: A, › Ganglioside GM2 activator 0.54 46.0 3.27e-01 100.0% 54.9%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 44.0 3.72e-01 100.0% 79.8%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.19e-01 100.0% 50.0%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.35e-01 100.0% 39.4%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.45e-01 100.0% 43.4%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.51e-01 94.0% 85.1%
7yj5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 44.0 3.13e-01 96.0% 40.0%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.56e-01 100.0% 50.0%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.32e-01 100.0% 43.0%
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.51 45.0 2.97e-01 100.0% 45.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.53e-01 100.0% 94.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946228 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 60.0 4.38e-01 90.0% 74.6%
3910257 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 54.0 4.76e-01 100.0% 54.7%
3308954 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.70 60.0 5.26e-01 100.0% 97.4%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 53.0 4.66e-01 100.0% 57.5%
3996565 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.66 58.0 3.68e-01 100.0% 22.0%
3514788 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 54.0 3.67e-01 100.0% 24.2%
3590914 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.65 56.0 4.39e-01 100.0% 96.4%
3963369 4222.1.1.2 a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.65 55.0 4.55e-01 100.0% 52.6%
3577630 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.64 54.0 4.09e-01 100.0% 37.7%
5049138 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 3.82e-01 92.0% 43.7%
4946800 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 49.0 3.60e-01 90.0% 43.2%
3733715 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 54.0 4.71e-01 100.0% 71.2%
3628286 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.63 52.0 3.87e-01 92.0% 76.9%
4949430 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.63 53.0 4.11e-01 100.0% 45.0%
4558763 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.63 53.0 3.89e-01 94.0% 75.6%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 49.0 4.91e-01 100.0% 88.0%
1007198 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.62 50.0 3.67e-01 100.0% 34.5%
3496461 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.62 52.0 3.66e-01 90.0% 95.2%
3593981 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.62 52.0 4.22e-01 100.0% 51.4%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.62 45.0 2.79e-01 100.0% 11.8%
3466416 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.61 53.0 3.54e-01 100.0% 26.7%
3739303 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 53.0 4.06e-01 100.0% 79.2%
3915274 11.1.6.8 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › FIIND 0.61 44.0 3.31e-01 100.0% 29.6%
3705532 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.60 49.0 3.82e-01 100.0% 41.5%
4954229 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.60 50.0 3.91e-01 100.0% 41.7%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 49.0 3.85e-01 100.0% 87.2%
3699048 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 49.0 3.89e-01 100.0% 47.0%
4944314 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.21e-01 90.0% 31.2%
5079949 829.1.1.3 a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.57 49.0 4.05e-01 100.0% 91.6%
3393085 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.90e-01 86.0% 68.0%
3566423 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 45.0 3.01e-01 90.0% 53.0%
4970098 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 45.0 3.69e-01 100.0% 49.1%
4946583 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.55 46.0 3.70e-01 100.0% 48.7%
4939155 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 45.0 3.57e-01 100.0% 45.4%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 42.0 4.12e-01 100.0% 81.0%
3443843 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 47.0 2.67e-01 100.0% 14.2%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.26e-01 92.0% 76.2%
4947810 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.05e-01 80.0% 39.2%
3310681 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.54 44.0 3.04e-01 100.0% 61.5%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.54 45.0 4.48e-01 100.0% 94.3%
3881456 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.46e-01 100.0% 52.0%
5049412 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 43.0 3.43e-01 100.0% 43.2%
3211414 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.57e-01 100.0% 47.8%
3441395 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.53 43.0 2.72e-01 100.0% 94.8%
3296178 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.52 47.0 2.59e-01 100.0% 8.4%
3897591 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 3.48e-01 100.0% 59.1%
3328959 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.52 46.0 2.83e-01 100.0% 27.3%
3379402 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.52 46.0 2.58e-01 100.0% 9.8%
3474293 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 41.0 3.03e-01 92.0% 66.7%
3651007 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.51 45.0 2.54e-01 100.0% 9.4%
3328617 109.4.1.1992 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif 0.51 45.0 2.51e-01 100.0% 8.7%
3302114 109.4.1.619 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.50 40.0 3.11e-01 100.0% 65.2%