←Back to structures

OP009271.1__UUV43538.1__RCJOLI_67__00067

Bact-Vir

OP009271.1__UUV43538.1__RCJOLI_67__00067

Identity

Accession:
OP009271 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Rhodobacter_phage_RcJoli

TaxID: 2970513

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: rep: KP696448.1__AKC02651.1__CPT_Stills23__00023__D3-61
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 4.45e-01 100.0% 46.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.07e-01 100.0% 71.2%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 47.0 3.95e-01 100.0% 40.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.07e-01 98.3% 71.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.66e-01 100.0% 94.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.03e-01 96.7% 76.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.17e-01 95.0% 91.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 4.99e-01 100.0% 64.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.04e-01 100.0% 67.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.95e-01 98.3% 80.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 5.41e-01 98.3% 87.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 51.0 4.09e-01 100.0% 44.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 48.0 4.88e-01 98.3% 85.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.89e-01 100.0% 87.5%
3cw3A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.61 37.0 3.26e-01 100.0% 39.8%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 42.0 2.56e-01 73.3% 96.5%
1eupA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 41.0 2.55e-01 73.3% 94.8%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.60 36.0 3.70e-01 100.0% 61.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 46.0 3.78e-01 100.0% 45.9%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 40.0 2.61e-01 71.7% 96.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.78e-01 100.0% 84.5%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.58 48.0 4.26e-01 100.0% 69.5%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.29e-01 100.0% 60.0%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 50.0 4.68e-01 100.0% 92.1%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 37.0 2.25e-01 70.0% 95.5%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.68e-01 90.0% 93.3%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.21e-01 100.0% 83.8%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 42.0 3.73e-01 91.7% 76.6%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.53 41.0 3.43e-01 91.7% 70.3%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 31.0 2.39e-01 71.7% 23.6%
1np6A02 2.20.25.120 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 25.0 3.43e-01 81.7% 92.6%
3zc4F02 2.30.30.1260 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.64e-01 80.0% 86.2%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.00e-01 98.3% 60.2%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 42.0 2.60e-01 100.0% 74.0%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.50 42.0 3.40e-01 100.0% 65.9%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 35.0 2.56e-01 76.7% 82.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 7.00e-01 100.0% 94.5%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.51e-01 100.0% 90.0%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.01e-01 100.0% 94.7%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.73 55.0 4.98e-01 100.0% 60.0%
4163851 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 53.0 5.34e-01 96.7% 76.7%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.73 54.0 5.18e-01 100.0% 68.6%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.48e-01 95.0% 95.6%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.69e-01 100.0% 94.0%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.72 53.0 5.47e-01 100.0% 83.9%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.48e-01 100.0% 85.5%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 52.0 5.23e-01 100.0% 80.0%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.20e-01 96.7% 83.6%
3603549 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.56e-01 100.0% 73.1%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.69 52.0 5.20e-01 96.7% 80.0%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.12e-01 100.0% 72.9%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 55.0 5.36e-01 100.0% 80.0%
5074749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 4.86e-01 100.0% 68.6%
1482194 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.69 50.0 5.03e-01 96.7% 76.7%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 3.85e-01 100.0% 31.6%
4088209 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 54.0 5.31e-01 100.0% 80.0%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 50.0 5.06e-01 100.0% 80.0%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.44e-01 100.0% 90.9%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.67e-01 98.3% 65.7%
4347922 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.25e-01 96.7% 83.3%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 53.0 5.10e-01 100.0% 75.4%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 53.0 5.22e-01 100.0% 80.0%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 54.0 5.14e-01 100.0% 75.7%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 53.0 5.11e-01 100.0% 75.4%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 4.99e-01 100.0% 81.7%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.67 53.0 3.16e-01 88.3% 13.4%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.96e-01 100.0% 75.4%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.83e-01 100.0% 76.2%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 5.02e-01 100.0% 75.7%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 5.10e-01 100.0% 81.5%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 4.83e-01 100.0% 70.7%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.21e-01 100.0% 84.6%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 4.88e-01 100.0% 72.6%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 51.0 4.83e-01 100.0% 72.6%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 4.93e-01 100.0% 81.5%
4954114 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.63 52.0 5.29e-01 93.3% 98.3%
4122525 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 51.0 4.79e-01 100.0% 73.3%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 5.13e-01 100.0% 85.1%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 46.0 4.59e-01 100.0% 76.9%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 54.0 4.70e-01 100.0% 63.2%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 45.0 4.05e-01 100.0% 54.4%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 49.0 4.79e-01 100.0% 81.5%
4959077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.24e-01 98.3% 100.0%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 3.15e-01 100.0% 16.9%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.57e-01 100.0% 75.7%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 42.0 3.30e-01 100.0% 32.6%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.58e-01 100.0% 74.0%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.49e-01 95.0% 80.0%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 47.0 4.66e-01 100.0% 81.5%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 51.0 4.49e-01 100.0% 63.3%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.99e-01 100.0% 87.5%
5022626 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.60 49.0 4.95e-01 91.7% 95.0%
4034317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.93e-01 98.3% 87.3%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.59 48.0 4.17e-01 100.0% 56.0%
4269844 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.18e-01 100.0% 71.4%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.58 37.0 3.80e-01 98.3% 66.7%
3590784 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.57 39.0 3.90e-01 96.7% 69.2%
3649561 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.56 40.0 2.62e-01 80.0% 50.6%
3426874 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.56 47.0 3.75e-01 100.0% 97.0%
3820823 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.55 41.0 2.74e-01 81.7% 88.0%
5016962 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.54 42.0 2.80e-01 86.7% 30.0%
3325330 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.54 38.0 2.78e-01 98.3% 24.1%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.53 45.0 4.43e-01 100.0% 100.0%
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 44.0 3.53e-01 100.0% 61.5%
3475431 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.53 47.0 3.12e-01 100.0% 40.8%
3385696 854.1.1.0 ↗ extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE 0.52 39.0 3.60e-01 81.7% 91.1%
3695902 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.52 48.0 3.26e-01 100.0% 42.6%
4994372 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 43.0 3.41e-01 100.0% 45.8%
4355655 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 42.0 3.48e-01 100.0% 96.8%