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OP009273.1__UUV43733.1__RCKEEF_93__00093

Bact-Vir

OP009273.1__UUV43733.1__RCKEEF_93__00093

Identity

Accession:
OP009273 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Rhodobacter_phage_RcKeef

TaxID: 2970515

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-58
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.81 68.0 6.19e-01 100.0% 71.0%
2olvB02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.77 67.0 4.46e-01 97.9% 27.4%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 67.0 4.80e-01 100.0% 62.8%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.72 59.0 5.09e-01 89.6% 65.8%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 61.0 4.55e-01 95.8% 73.5%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.70 61.0 5.03e-01 100.0% 60.2%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.70 60.0 4.96e-01 91.7% 79.5%
6hrdA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 57.0 3.70e-01 87.5% 26.2%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.68 59.0 4.63e-01 95.8% 74.0%
6dv2G02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 53.0 3.54e-01 85.4% 27.2%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.68 60.0 4.72e-01 100.0% 67.3%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 51.0 4.10e-01 83.3% 41.7%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.66 56.0 3.71e-01 100.0% 58.4%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 61.0 4.74e-01 100.0% 56.2%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 56.0 3.70e-01 100.0% 87.4%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.61 53.0 3.59e-01 100.0% 52.2%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.58 48.0 4.10e-01 100.0% 69.7%
1szpB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.26e-01 100.0% 73.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1122242 235.1.1.5 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly 0.82 72.0 5.58e-01 97.9% 51.5%
3959807 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.79 70.0 5.50e-01 100.0% 52.0%
3943489 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 62.0 4.76e-01 85.4% 70.0%
4861235 3078.1.1.1 ↗ extended segments › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › Flu_PB1 0.76 60.0 5.69e-01 85.4% 82.1%
3594103 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.75 53.0 3.44e-01 75.0% 26.5%
3988856 4146.1.1.1 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like 0.73 66.0 5.65e-01 100.0% 67.6%
4358621 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.69 61.0 5.10e-01 95.8% 60.8%
3706898 2003.1.1.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.69 55.0 3.54e-01 85.4% 24.5%
3701043 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 54.0 3.59e-01 87.5% 22.6%
3713916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.63e-01 100.0% 49.0%
3461571 2003.1.1.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.65 55.0 3.73e-01 91.7% 29.4%
5076363 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.64 58.0 4.72e-01 97.9% 63.5%
4983960 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.64 56.0 4.65e-01 93.8% 71.2%
4567001 604.34.1.1 ↗ alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB 0.64 59.0 4.59e-01 100.0% 52.6%
3915619 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.63 50.0 3.19e-01 89.6% 80.8%