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OP009274.1__UUV43800.1__RCKICKAPOO_59__00059

Bact-Vir

OP009274.1__UUV43800.1__RCKICKAPOO_59__00059

Identity

Accession:
OP009274 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcKickapoo

TaxID: 2970516

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 155-249
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 63.0 6.53e-01 100.0% 97.8%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 60.0 6.35e-01 94.7% 100.0%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 64.0 6.52e-01 98.9% 100.0%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 62.0 6.36e-01 98.9% 100.0%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 6.07e-01 100.0% 88.1%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.55 44.0 3.48e-01 89.5% 97.7%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 46.0 4.31e-01 100.0% 84.4%
6ebqA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 36.0 3.25e-01 74.7% 78.3%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.50 41.0 3.28e-01 92.6% 78.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 63.0 6.56e-01 98.9% 98.9%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.74 66.0 6.65e-01 100.0% 97.9%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 63.0 6.07e-01 100.0% 88.1%
3599238 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.67 56.0 4.61e-01 100.0% 50.6%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 46.0 4.09e-01 72.6% 72.3%
4663567 207.6.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation 0.57 45.0 2.77e-01 100.0% 13.5%
3501725 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.54 40.0 3.00e-01 82.1% 60.7%
3836258 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 41.0 3.99e-01 82.1% 95.2%
4514585 207.6.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › HemolysinCabind+RTX_C 0.53 46.0 3.30e-01 100.0% 34.2%
3484290 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.70e-01 92.6% 89.7%
3344608 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 39.0 3.90e-01 84.2% 94.0%
3811574 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 39.0 3.87e-01 83.2% 92.0%
D2 medium residues 64-79_94-146
PDB