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OP009274.1__UUV43869.1__RCKICKAPOO_128__00128

Bact-Vir

OP009274.1__UUV43869.1__RCKICKAPOO_128__00128

Identity

Accession:
OP009274 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcKickapoo

TaxID: 2970516

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-147
PDB
Domain cluster: rep: FFC_09252017_16_scaffold_4_prodigal-single.1__X__X__00050__D52-146
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.59e-01 90.6% 77.1%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.31e-01 71.7% 77.7%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.58e-01 71.7% 89.7%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 4.37e-01 91.5% 89.6%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.20e-01 93.4% 72.2%
6bs6B01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 36.0 3.86e-01 99.1% 80.4%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 37.0 4.05e-01 90.6% 86.5%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 34.0 3.78e-01 99.1% 87.3%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 34.0 3.99e-01 99.1% 100.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281749 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.61 43.0 4.21e-01 72.6% 92.2%
5012029 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.60 42.0 4.03e-01 71.7% 63.3%
5035685 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 45.0 4.24e-01 92.5% 68.5%
3332113 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.57 32.0 3.77e-01 81.1% 81.4%
5025618 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.17e-01 95.3% 76.4%
4976186 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 44.0 3.87e-01 94.3% 60.6%
4986906 328.5.1.0 ↗ a+b two layers › IF3-like › SirA-like › SirA-like 0.53 33.0 3.81e-01 95.3% 92.9%
4974447 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.79e-01 95.3% 70.8%
4097380 325.1.1.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_C 0.51 26.0 2.29e-01 97.2% 29.4%
3602520 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.51 27.0 3.09e-01 91.5% 68.0%
4570129 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.50 43.0 3.59e-01 94.3% 96.8%
4983373 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.50 42.0 3.38e-01 93.4% 73.0%