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OP009281.1__UUV44412.1__RCMENCHIE_43__00043
Bact-VirOP009281.1__UUV44412.1__RCMENCHIE_43__00043
Identity
- Accession:
- OP009281 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7o49B01 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 59.0 | 4.95e-01 | 100.0% | 100.0% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 54.0 | 4.55e-01 | 100.0% | 51.5% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 50.0 | 4.21e-01 | 100.0% | 47.4% |
| 1g4mA01 | 2.60.40.840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 57.0 | 3.95e-01 | 100.0% | 51.5% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 49.0 | 4.20e-01 | 86.8% | 100.0% |
| 4gucA00 | 2.60.40.3720 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 55.0 | 4.30e-01 | 100.0% | 51.3% |
| 5yrzA01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 52.0 | 4.26e-01 | 100.0% | 97.1% |
| 1jyhA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.61 | 50.0 | 3.74e-01 | 100.0% | 54.8% |
| 1wxaA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 51.0 | 4.06e-01 | 100.0% | 54.3% |
| 4e6zA02 | 3.40.1350.100 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 51.0 | 4.32e-01 | 100.0% | 60.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.57 | 45.0 | 4.32e-01 | 100.0% | 77.3% |
| 7k7jA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.90e-01 | 100.0% | 62.0% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.57 | 45.0 | 4.54e-01 | 98.1% | 92.5% |
| 2outA01 | 3.40.5.80 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.56 | 44.0 | 4.40e-01 | 90.6% | 100.0% |
| 4gvbB00 | 3.30.70.440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit | 0.55 | 45.0 | 4.14e-01 | 98.1% | 98.6% |
| 1rlhA02 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.55 | 43.0 | 3.62e-01 | 90.6% | 100.0% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.55 | 46.0 | 3.99e-01 | 98.1% | 73.0% |
| 3npfA03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 44.0 | 3.33e-01 | 100.0% | 83.2% |
| 3vx8A02 | 3.40.140.70 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain | 0.55 | 42.0 | 3.10e-01 | 100.0% | 29.3% |
| 4owpB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 44.0 | 3.27e-01 | 100.0% | 39.2% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.03e-01 | 94.3% | 100.0% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 47.0 | 3.73e-01 | 100.0% | 47.7% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.54 | 44.0 | 4.25e-01 | 98.1% | 82.5% |
| 6bq9A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 39.0 | 3.39e-01 | 79.2% | 78.7% |
| 2btwA00 | 3.90.70.30 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain | 0.54 | 40.0 | 2.79e-01 | 83.0% | 73.8% |
| 1wftA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.65e-01 | 100.0% | 60.6% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 39.0 | 3.72e-01 | 86.8% | 100.0% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.53 | 43.0 | 3.48e-01 | 96.2% | 66.1% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 41.0 | 3.12e-01 | 90.6% | 36.1% |
| 5dynA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 39.0 | 3.29e-01 | 88.7% | 86.8% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 44.0 | 4.24e-01 | 100.0% | 88.5% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 44.0 | 3.59e-01 | 100.0% | 49.1% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.51 | 41.0 | 4.00e-01 | 98.1% | 88.3% |
| 1wvqA00 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.51 | 41.0 | 3.03e-01 | 96.2% | 63.8% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 39.0 | 3.54e-01 | 88.7% | 95.1% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 2.97e-01 | 77.4% | 97.1% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.52e-01 | 100.0% | 53.5% |
| 1d5yB03 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.50 | 38.0 | 2.83e-01 | 88.7% | 85.1% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721982 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.73 | 62.0 | 5.09e-01 | 94.3% | 100.0% |
| 3905971 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.71 | 61.0 | 4.84e-01 | 98.1% | 53.6% |
| 3250014 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.70 | 52.0 | 3.84e-01 | 81.1% | 50.0% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.67 | 50.0 | 4.43e-01 | 81.1% | 57.5% |
| 3689024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.65 | 56.0 | 4.26e-01 | 100.0% | 42.3% |
| 3582833 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.64 | 54.0 | 4.35e-01 | 98.1% | 50.0% |
| 3929801 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.63 | 51.0 | 4.31e-01 | 96.2% | 52.6% |
| 3218957 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.62 | 51.0 | 4.07e-01 | 98.1% | 44.3% |
| 3506484 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.62 | 52.0 | 3.74e-01 | 96.2% | 38.7% |
| 5067539 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 52.0 | 4.11e-01 | 100.0% | 60.9% |
| 4556103 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.60 | 48.0 | 3.63e-01 | 96.2% | 48.0% |
| 3936535 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 53.0 | 4.25e-01 | 100.0% | 53.3% |
| 3894112 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.60 | 48.0 | 3.61e-01 | 100.0% | 36.9% |
| 3494762 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.60 | 49.0 | 3.57e-01 | 98.1% | 50.6% |
| 4027774 | 710.1.1.1 ↗ | beta complex topology › Obg GTP-binding protein N-terminal domain › Obg GTP-binding protein N-terminal domain › Obg GTP-binding protein N-terminal domain › GTP1_OBG | 0.59 | 50.0 | 3.68e-01 | 100.0% | 99.4% |
| 3170806 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.59 | 51.0 | 3.63e-01 | 100.0% | 65.5% |
| 4032900 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.58 | 48.0 | 3.93e-01 | 96.2% | 71.4% |
| 3546856 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.57 | 49.0 | 3.68e-01 | 100.0% | 63.6% |
| 3252988 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.57 | 45.0 | 2.82e-01 | 88.7% | 76.6% |
| 3243722 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.57 | 41.0 | 3.43e-01 | 98.1% | 42.0% |
| 4949769 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 48.0 | 3.90e-01 | 96.2% | 63.8% |
| 3256274 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.57 | 38.0 | 2.54e-01 | 73.6% | 38.2% |
| 4019428 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 45.0 | 3.90e-01 | 100.0% | 63.0% |
| 3793097 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.57 | 47.0 | 3.73e-01 | 100.0% | 94.4% |
| 3181848 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 3.44e-01 | 100.0% | 48.6% |
| 5021963 | 304.8.1.116 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3303 | 0.56 | 45.0 | 3.74e-01 | 96.2% | 75.2% |
| 3426937 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 45.0 | 2.63e-01 | 100.0% | 9.6% |
| 3943285 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.55 | 44.0 | 3.67e-01 | 96.2% | 73.4% |
| 5003377 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.55 | 43.0 | 3.15e-01 | 100.0% | 56.4% |
| 3694201 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.55 | 42.0 | 3.33e-01 | 94.3% | 71.9% |
| 3905459 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 47.0 | 3.61e-01 | 100.0% | 49.2% |
| 4458441 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.54 | 39.0 | 2.87e-01 | 79.2% | 79.4% |
| 3594101 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.54 | 45.0 | 3.30e-01 | 100.0% | 33.5% |
| 3312666 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 4.12e-01 | 100.0% | 72.9% |
| 3922317 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 43.0 | 3.17e-01 | 100.0% | 41.1% |
| 3929887 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.54 | 45.0 | 3.67e-01 | 100.0% | 52.7% |
| 3718938 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 47.0 | 3.68e-01 | 100.0% | 46.9% |
| 4002986 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.53 | 47.0 | 3.62e-01 | 100.0% | 94.4% |
| 3171619 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.53 | 43.0 | 3.80e-01 | 100.0% | 98.9% |
| 3488745 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.52 | 42.0 | 3.51e-01 | 100.0% | 63.6% |
| 3477632 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 43.0 | 3.18e-01 | 100.0% | 49.4% |
| 3486745 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.30e-01 | 100.0% | 54.8% |
| 3455763 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 41.0 | 3.47e-01 | 100.0% | 48.2% |
| 3667441 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.52 | 41.0 | 3.28e-01 | 98.1% | 46.2% |
| 3488490 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 42.0 | 3.53e-01 | 100.0% | 51.4% |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.51 | 41.0 | 3.34e-01 | 98.1% | 69.2% |
| 5083964 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 37.0 | 3.18e-01 | 84.9% | 47.0% |
| 3192640 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.51 | 38.0 | 3.19e-01 | 100.0% | 45.0% |
| 4095714 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.50 | 39.0 | 3.20e-01 | 90.6% | 100.0% |