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OP009281.1__UUV44417.1__RCMENCHIE_48__00048

Bact-Vir

OP009281.1__UUV44417.1__RCMENCHIE_48__00048

Identity

Accession:
OP009281 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcMenchie

TaxID: 2970523

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-155_345-378
PDB
Domain cluster: rep: ON529853.1__UTC29511.1__BAMBUS_04320__00428__D1-82_559-593
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09343.16 best DUF2460 64.0 1.90e-17 69.6% 37.8%
D2 medium residues 1-73
PDB
D3 medium residues 176-238_332-343
PDB
Domain cluster: rep: OP186293.1__UVD36482.1__RCXUPER_64__00035__D186-271
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09343.16 best DUF2460 36.3 6.00e-09 100.0% 38.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7o0eA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 48.0 4.65e-01 100.0% 74.7%
5ze3A02 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.60 45.0 4.04e-01 82.7% 100.0%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 34.0 2.45e-01 90.7% 19.5%
5nn3A05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 49.0 4.09e-01 96.0% 53.8%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.33e-01 100.0% 73.9%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.54 44.0 3.55e-01 98.7% 86.7%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.19e-01 98.7% 81.9%
3i2dA01 2.60.120.780 Mainly Beta › Sandwich › Jelly Rolls › PINIT domain 0.51 42.0 3.48e-01 97.3% 81.3%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.69e-01 100.0% 57.5%
5i8dA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 42.0 3.81e-01 100.0% 72.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009896 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 53.0 4.50e-01 98.7% 47.6%
3589760 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 52.0 4.12e-01 98.7% 38.1%
5009887 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 52.0 4.41e-01 98.7% 47.2%
4958191 12.2.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.69 54.0 4.56e-01 100.0% 50.8%
4932962 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 51.0 4.46e-01 98.7% 53.0%
4011056 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 5.25e-01 100.0% 80.0%
3738652 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 54.0 4.44e-01 100.0% 57.8%
3247884 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 3.85e-01 98.7% 46.2%
3576528 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 50.0 4.47e-01 98.7% 98.2%
2095620 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 49.0 4.08e-01 96.0% 53.4%
3628597 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 49.0 3.90e-01 100.0% 70.6%
4928860 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 47.0 4.76e-01 98.7% 97.3%
5045190 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 47.0 4.47e-01 98.7% 82.0%
5028939 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.64e-01 97.3% 98.6%
5051319 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 45.0 4.51e-01 96.0% 94.7%
3197476 10.32.1.42 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PINIT 0.54 46.0 3.86e-01 100.0% 68.6%
4969133 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.53 47.0 4.35e-01 100.0% 82.1%
3088569 10.32.1.73 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.53 47.0 3.66e-01 100.0% 50.3%
3923308 11.1.1.291 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_SUH 0.53 46.0 4.04e-01 98.7% 81.4%
3545416 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.97e-01 100.0% 78.8%
3411008 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.95e-01 100.0% 92.7%
3487189 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.75e-01 98.7% 86.2%
3498498 11.1.1.291 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_SUH 0.51 44.0 3.74e-01 98.7% 86.2%
1209415 10.32.1.190 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › STIV_turret_1st 0.50 35.0 2.95e-01 76.0% 86.4%
D4 medium residues 246-328
PDB