←Back to structures
OP009284.1__UUV44672.1__RCPERIPETEIA_1__00001
Bact-VirOP009284.1__UUV44672.1__RCPERIPETEIA_1__00001
Identity
- Accession:
- OP009284 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
TaxID: 2970526
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 238-323
Domain cluster:
rep: putative_primase__YP_009506829__Tunisvirus_fontaine2__1421067__D281-379
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08707.17 best | PriCT_2 | 72.9 | 3.10e-20 | 90.7% | 98.7% |
D2
high
residues 736-754_766-838
Domain cluster:
rep: IMGVR_UViG_3300014039_000036-3300014039-Ga0116646_100011759__D492-571
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 55.0 | 6.08e-01 | 90.2% | 98.7% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 52.0 | 5.70e-01 | 90.2% | 94.7% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.69 | 52.0 | 5.48e-01 | 90.2% | 90.1% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.62e-01 | 91.3% | 68.0% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 43.0 | 4.26e-01 | 90.2% | 61.6% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 4.48e-01 | 91.3% | 68.6% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 46.0 | 4.65e-01 | 88.0% | 80.0% |
| 3euhC02 | 1.10.10.2260 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain | 0.61 | 50.0 | 4.77e-01 | 90.2% | 85.2% |
| 3rsnA00 | 3.90.980.20 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › | 0.60 | 49.0 | 4.06e-01 | 88.0% | 57.6% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.60 | 45.0 | 4.51e-01 | 100.0% | 77.7% |
| 3dpuA03 | 1.10.10.2200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 43.0 | 4.66e-01 | 93.5% | 94.7% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 4.60e-01 | 90.2% | 98.6% |
| 3h35A00 | 3.30.110.190 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.58 | 47.0 | 4.11e-01 | 90.2% | 79.2% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.57 | 47.0 | 4.27e-01 | 90.2% | 78.0% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.93e-01 | 90.2% | 82.1% |
| 1b7yB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 43.0 | 3.44e-01 | 93.5% | 76.4% |
| 6fdfA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 41.0 | 3.21e-01 | 96.7% | 40.5% |
| 1sw2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 40.0 | 3.42e-01 | 90.2% | 52.4% |
| 3o66B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 39.0 | 3.36e-01 | 89.1% | 50.0% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3169812 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.73 | 57.0 | 4.66e-01 | 96.7% | 46.9% |
| 3728309 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 5.37e-01 | 91.3% | 95.7% |
| 3587913 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.68 | 46.0 | 4.13e-01 | 89.1% | 50.0% |
| 4927412 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 48.0 | 4.95e-01 | 91.3% | 80.0% |
| 3988732 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.67 | 48.0 | 4.60e-01 | 91.3% | 64.8% |
| 3990493 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 52.0 | 5.27e-01 | 91.3% | 86.7% |
| 5044288 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 47.0 | 4.96e-01 | 90.2% | 86.3% |
| 3735293 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.65 | 54.0 | 3.89e-01 | 91.3% | 33.5% |
| 5080548 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 4.94e-01 | 84.8% | 90.7% |
| 4931729 | 101.1.2.953 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29890 | 0.64 | 54.0 | 4.91e-01 | 92.4% | 68.0% |
| 3895945 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.64 | 46.0 | 3.83e-01 | 91.3% | 42.4% |
| 5075009 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 4.58e-01 | 90.2% | 73.7% |
| 3269533 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 4.98e-01 | 90.2% | 94.7% |
| 5029803 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 4.15e-01 | 90.2% | 54.6% |
| 3700540 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 51.0 | 5.40e-01 | 89.1% | 98.8% |
| 3597278 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 4.65e-01 | 92.4% | 77.8% |
| 3881281 | 101.1.2.79 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 | 0.63 | 48.0 | 5.19e-01 | 91.3% | 98.7% |
| 3802667 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.63 | 48.0 | 4.65e-01 | 90.2% | 73.3% |
| 3590074 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 51.0 | 4.63e-01 | 90.2% | 70.4% |
| 4971999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 52.0 | 4.71e-01 | 91.3% | 67.2% |
| 3272642 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 49.0 | 4.89e-01 | 90.2% | 83.2% |
| 4934055 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 45.0 | 4.82e-01 | 90.2% | 90.0% |
| 3853184 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.61 | 51.0 | 4.32e-01 | 91.3% | 63.2% |
| 3637467 | 101.1.2.74 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cnd2 | 0.61 | 52.0 | 5.03e-01 | 92.4% | 87.4% |
| 5051269 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.53e-01 | 87.0% | 81.2% |
| 3481449 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.61 | 51.0 | 4.04e-01 | 90.2% | 47.8% |
| 4969210 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.60 | 47.0 | 4.69e-01 | 91.3% | 80.0% |
| 5002609 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 4.70e-01 | 87.0% | 81.1% |
| 4252267 | 213.1.1.7 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB | 0.60 | 51.0 | 4.06e-01 | 97.8% | 46.7% |
| 3250041 | 101.1.2.525 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7646 | 0.60 | 52.0 | 3.90e-01 | 97.8% | 39.1% |
| 3386834 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 49.0 | 4.51e-01 | 90.2% | 72.5% |
| 4310506 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.59 | 49.0 | 3.72e-01 | 91.3% | 39.6% |
| 5022580 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 4.10e-01 | 90.2% | 72.2% |
| 3800952 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 46.0 | 3.47e-01 | 100.0% | 35.0% |
| 4950205 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 49.0 | 4.62e-01 | 91.3% | 77.3% |
| 4955510 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 3.83e-01 | 82.6% | 57.3% |
| 3316881 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 47.0 | 3.90e-01 | 91.3% | 48.8% |
| 3686892 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.58 | 47.0 | 4.85e-01 | 100.0% | 97.6% |
| 3932917 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.94e-01 | 94.6% | 100.0% |
| 1166576 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 45.0 | 4.30e-01 | 91.3% | 72.9% |
| 3657248 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.57 | 51.0 | 4.93e-01 | 100.0% | 87.6% |
| 3342515 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 47.0 | 4.39e-01 | 91.3% | 72.2% |
| 3169008 | 101.1.9.37 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › CRC_subunit | 0.57 | 40.0 | 3.44e-01 | 72.8% | 63.8% |
| 4972569 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.57 | 42.0 | 3.97e-01 | 91.3% | 65.5% |
| 3597631 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 3.45e-01 | 91.3% | 39.2% |
| 3300362 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 3.78e-01 | 91.3% | 48.2% |
| 5066201 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.56 | 44.0 | 4.34e-01 | 91.3% | 78.0% |
| 4954006 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.56 | 44.0 | 4.44e-01 | 91.3% | 83.2% |
| 4953109 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.56 | 44.0 | 4.38e-01 | 91.3% | 82.1% |
| 3264027 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.79e-01 | 98.9% | 98.9% |
| 3467403 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.55 | 41.0 | 4.35e-01 | 88.0% | 91.3% |
| 3313270 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.55 | 35.0 | 3.49e-01 | 83.7% | 59.0% |
| 5058376 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.43e-01 | 91.3% | 85.3% |
| 4968278 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.54 | 41.0 | 4.31e-01 | 91.3% | 89.4% |
| 3980386 | 7523.1.1.17 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC | 0.54 | 43.0 | 3.58e-01 | 89.1% | 53.4% |
| 4947811 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 47.0 | 4.40e-01 | 96.7% | 92.2% |
| 3568294 | 173.1.1.1 ↗ | alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Uteroglobin | 0.54 | 30.0 | 3.42e-01 | 87.0% | 75.4% |
| 5076338 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 43.0 | 3.47e-01 | 90.2% | 44.3% |
| 3443785 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.53 | 43.0 | 4.23e-01 | 91.3% | 85.0% |
| 3164764 | 2008.1.1.168 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 | 0.52 | 40.0 | 4.11e-01 | 88.0% | 89.4% |
| 4994902 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.52 | 35.0 | 3.37e-01 | 85.9% | 61.0% |
| 3970853 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 41.0 | 3.39e-01 | 89.1% | 72.0% |
| 3678528 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 42.0 | 3.75e-01 | 91.3% | 77.0% |
| 4942681 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.50 | 41.0 | 3.32e-01 | 91.3% | 53.0% |
D3
medium
residues 1-75_164-202
Domain cluster:
rep: GU169904.1__ACZ55506.1__X__00009__D1-68_134-173
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2knqA01 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.52 | 31.0 | 2.96e-01 | 79.8% | 49.2% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 39.0 | 4.05e-01 | 78.1% | 100.0% |
| 2pq0A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 37.0 | 3.94e-01 | 77.2% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039858 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.74 | 66.0 | 5.77e-01 | 93.9% | 100.0% |
| 3280020 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.72 | 65.0 | 5.55e-01 | 96.5% | 95.4% |
| 4940784 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.71 | 60.0 | 5.37e-01 | 89.5% | 94.2% |
| 7174 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.70 | 63.0 | 5.05e-01 | 95.6% | 87.1% |
| 4959587 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.70 | 61.0 | 5.35e-01 | 95.6% | 97.6% |
| 3590864 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.56 | 38.0 | 4.02e-01 | 70.2% | 100.0% |
| 5013119 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.55 | 31.0 | 3.04e-01 | 82.5% | 49.2% |
D4
medium
residues 76-163_203-213
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 40.0 | 4.60e-01 | 87.9% | 98.6% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.71e-01 | 85.9% | 53.8% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 4.41e-01 | 87.9% | 97.3% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 43.0 | 4.54e-01 | 88.9% | 92.9% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 40.0 | 4.09e-01 | 86.9% | 75.8% |
| 3p3dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 41.0 | 4.37e-01 | 86.9% | 89.7% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 4.15e-01 | 87.9% | 76.9% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 35.0 | 3.96e-01 | 83.8% | 86.5% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 40.0 | 4.37e-01 | 88.9% | 97.5% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 39.0 | 4.10e-01 | 87.9% | 82.2% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 40.0 | 4.40e-01 | 87.9% | 98.7% |
| 2j0wA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 39.0 | 4.41e-01 | 84.8% | 100.0% |
| 2go9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 39.0 | 4.23e-01 | 85.9% | 96.1% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.54 | 38.0 | 4.24e-01 | 87.9% | 94.8% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.54 | 36.0 | 4.20e-01 | 85.9% | 100.0% |
| 1s79A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 39.0 | 3.88e-01 | 88.9% | 73.8% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 4.07e-01 | 88.9% | 82.8% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 4.36e-01 | 87.9% | 94.8% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.53 | 37.0 | 4.04e-01 | 85.9% | 89.0% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 4.08e-01 | 87.9% | 92.6% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 4.35e-01 | 87.9% | 89.8% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.53 | 41.0 | 4.17e-01 | 99.0% | 87.5% |
| 4zosB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 4.33e-01 | 88.9% | 92.8% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.81e-01 | 87.9% | 88.0% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.39e-01 | 88.9% | 93.6% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 4.30e-01 | 87.9% | 92.7% |
| 6nqbF00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 36.0 | 4.01e-01 | 87.9% | 93.5% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.93e-01 | 88.9% | 92.0% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 4.17e-01 | 87.9% | 84.0% |
| 2kyzA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.91e-01 | 86.9% | 98.5% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 4.27e-01 | 88.9% | 89.1% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.89e-01 | 87.9% | 80.6% |
| 4lbhA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.51 | 41.0 | 4.20e-01 | 87.9% | 93.6% |
| 4a8xA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 38.0 | 4.00e-01 | 87.9% | 90.9% |
| 2dy1A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.51 | 34.0 | 3.76e-01 | 85.9% | 90.8% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 4.07e-01 | 88.9% | 83.8% |
| 3fgvA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 4.15e-01 | 87.9% | 94.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236581 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 45.0 | 5.02e-01 | 86.9% | 98.7% |
| 3504994 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.61 | 43.0 | 4.32e-01 | 87.9% | 73.7% |
| 4523483 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.58 | 40.0 | 4.49e-01 | 86.9% | 94.7% |
| 2879783 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 41.0 | 4.56e-01 | 87.9% | 97.3% |
| 4329039 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.58 | 38.0 | 4.35e-01 | 87.9% | 95.7% |
| 4970609 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.58 | 39.0 | 4.35e-01 | 86.9% | 97.1% |
| 5014123 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 40.0 | 4.25e-01 | 86.9% | 83.5% |
| 5038088 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.57 | 36.0 | 4.22e-01 | 85.9% | 96.9% |
| 3260643 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.57 | 41.0 | 4.49e-01 | 87.9% | 95.0% |
| 4946082 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 39.0 | 4.29e-01 | 87.9% | 93.3% |
| 4107410 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.56 | 39.0 | 4.33e-01 | 86.9% | 94.7% |
| 3738385 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.56 | 38.0 | 4.10e-01 | 85.9% | 82.4% |
| 3505715 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.56 | 38.0 | 4.19e-01 | 85.9% | 87.5% |
| 3609452 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.56 | 40.0 | 4.35e-01 | 87.9% | 92.5% |
| 5000359 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.56 | 38.0 | 4.31e-01 | 87.9% | 94.7% |
| 4943445 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 39.0 | 4.35e-01 | 87.9% | 96.0% |
| 5081186 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.55 | 38.0 | 4.22e-01 | 86.9% | 94.7% |
| 4012791 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 39.0 | 4.27e-01 | 85.9% | 91.3% |
| 3585590 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 48.0 | 3.70e-01 | 97.0% | 67.8% |
| 4030665 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.55 | 39.0 | 4.10e-01 | 87.9% | 81.1% |
| 4131077 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.55 | 39.0 | 4.35e-01 | 86.9% | 97.3% |
| 3596989 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 39.0 | 4.31e-01 | 87.9% | 92.5% |
| 4340473 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.55 | 38.0 | 4.08e-01 | 86.9% | 83.5% |
| 3601388 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 37.0 | 4.17e-01 | 85.9% | 92.0% |
| 4939299 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.55 | 39.0 | 4.09e-01 | 87.9% | 81.1% |
| 3611003 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 39.0 | 4.25e-01 | 87.9% | 91.3% |
| 4027427 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 38.0 | 4.30e-01 | 86.9% | 96.0% |
| 4995922 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.55 | 38.0 | 4.20e-01 | 87.9% | 94.7% |
| 4980947 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 39.0 | 4.12e-01 | 87.9% | 84.4% |
| 4299522 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.55 | 36.0 | 4.04e-01 | 87.9% | 95.7% |
| 3683611 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.55 | 39.0 | 4.14e-01 | 87.9% | 85.9% |
| 4936511 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.54 | 44.0 | 4.29e-01 | 87.9% | 95.5% |
| 4056781 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.54 | 38.0 | 3.43e-01 | 87.9% | 52.1% |
| 3958992 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 36.0 | 4.00e-01 | 83.8% | 86.3% |
| 3971048 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.54 | 36.0 | 4.04e-01 | 86.9% | 97.1% |
| 3315583 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.53 | 37.0 | 4.03e-01 | 83.8% | 94.7% |
| 3800111 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.53 | 47.0 | 2.80e-01 | 100.0% | 18.5% |
| 3496728 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 38.0 | 3.92e-01 | 86.9% | 82.2% |
| 4011415 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 37.0 | 4.01e-01 | 87.9% | 85.9% |
| 2987712 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.53 | 36.0 | 3.92e-01 | 83.8% | 87.3% |
| 4105204 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.53 | 37.0 | 4.04e-01 | 87.9% | 91.3% |
| 5147 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 34.0 | 3.87e-01 | 81.8% | 100.0% |
| 3955901 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.52 | 35.0 | 3.89e-01 | 83.8% | 90.7% |
| 3281154 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.52 | 35.0 | 3.80e-01 | 83.8% | 85.0% |
| 4983101 | 304.17.1.2 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN | 0.52 | 35.0 | 3.77e-01 | 86.9% | 85.0% |
| 3923566 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.52 | 37.0 | 4.04e-01 | 86.9% | 96.2% |
| 4455319 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.51 | 35.0 | 3.82e-01 | 85.9% | 87.5% |
| 3328712 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.51 | 35.0 | 2.78e-01 | 71.7% | 98.7% |
| 4676848 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.51 | 35.0 | 3.91e-01 | 86.9% | 96.0% |
D5
medium
residues 389-424_449-478
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ce7A00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.56 | 46.0 | 4.15e-01 | 100.0% | 66.7% |
| 4ddpA00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.52 | 44.0 | 3.22e-01 | 98.5% | 63.1% |
| 3vppB00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.50 | 33.0 | 2.69e-01 | 74.2% | 36.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033826 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 76.0 | 6.57e-01 | 100.0% | 67.4% |
| 3312431 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.58 | 39.0 | 3.20e-01 | 100.0% | 36.8% |
| 3349782 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.57 | 30.0 | 2.63e-01 | 100.0% | 30.5% |
| 3392054 | 109.4.1.1784 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28344 | 0.55 | 44.0 | 2.49e-01 | 100.0% | 6.7% |
| 3615330 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 39.0 | 2.43e-01 | 81.8% | 28.4% |
| 3830570 | 148.1.3.54 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C | 0.51 | 33.0 | 2.75e-01 | 86.4% | 37.4% |
| 3517171 | 604.8.1.3 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 | 0.50 | 34.0 | 2.47e-01 | 75.8% | 22.9% |
D6
medium
residues 563-679
Domain cluster:
rep: highly_derived_D5-like_helicase-primase__YP_003406787__Marseillevirus_marseillevirus__694581__D555-677
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05272.18 best | VapE-like_dom | 141.2 | 4.80e-41 | 100.0% | 50.7% |
| PF19263.6 | DUF5906 | 37.8 | 3.70e-09 | 88.9% | 98.2% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 67.0 | 5.59e-01 | 100.0% | 62.4% |
| 1g8pA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 64.0 | 5.31e-01 | 94.9% | 82.9% |
| 1svmA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 61.0 | 5.55e-01 | 97.4% | 81.0% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 58.0 | 4.03e-01 | 94.0% | 37.0% |
| 3vkhA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 59.0 | 4.18e-01 | 97.4% | 41.3% |
| 3ja8204 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 58.0 | 4.22e-01 | 99.1% | 45.5% |
| 4akgA12 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 56.0 | 5.66e-01 | 93.2% | 93.2% |
| 2qenA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 55.0 | 4.60e-01 | 95.7% | 81.7% |
| 6znpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 53.0 | 4.38e-01 | 93.2% | 79.2% |
| 6s8oB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 4.31e-01 | 97.4% | 84.0% |
| 4r7zA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 3.89e-01 | 100.0% | 47.8% |
| 1fhvA01 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.59 | 48.0 | 4.00e-01 | 87.2% | 79.8% |
| 2p7iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 52.0 | 4.22e-01 | 100.0% | 90.7% |
| 3rdkB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 48.0 | 3.49e-01 | 94.0% | 85.6% |
| 3nwrA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.56 | 48.0 | 3.74e-01 | 98.3% | 79.4% |
| 3cc8A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.95e-01 | 93.2% | 79.1% |
| 2xgjB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 4.08e-01 | 97.4% | 73.8% |
| 2chrA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.55 | 47.0 | 3.97e-01 | 94.0% | 94.1% |
| 1p5jA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 34.0 | 3.67e-01 | 74.4% | 72.9% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 48.0 | 3.61e-01 | 98.3% | 77.9% |
| 3qz6A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.55 | 46.0 | 3.67e-01 | 94.9% | 84.6% |
| 3g8rA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 46.0 | 3.65e-01 | 94.9% | 96.5% |
| 3hl0A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 4.14e-01 | 94.9% | 86.2% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 46.0 | 3.51e-01 | 99.1% | 86.4% |
| 1j79A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 45.0 | 3.30e-01 | 95.7% | 68.8% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 46.0 | 3.43e-01 | 98.3% | 83.7% |
| 6jdrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 47.0 | 4.39e-01 | 98.3% | 89.5% |
| 4epkB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 43.0 | 3.19e-01 | 92.3% | 89.7% |
| 3kzhB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 45.0 | 3.36e-01 | 98.3% | 77.1% |
| 3ce9A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 4.04e-01 | 94.9% | 89.0% |
| 5lklB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 4.10e-01 | 94.9% | 87.5% |
| 1xa3A01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.51 | 43.0 | 3.29e-01 | 94.9% | 62.6% |
| 6c49A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 4.12e-01 | 98.3% | 92.8% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 43.0 | 3.89e-01 | 94.9% | 87.9% |
| 3hgtA00 | 3.40.50.12360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 45.0 | 3.42e-01 | 100.0% | 84.6% |
| 3lzwA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 38.0 | 3.81e-01 | 83.8% | 79.0% |
| 5t9gB03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 44.0 | 3.25e-01 | 98.3% | 88.7% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033843 | 2004.1.1.313 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom | 0.91 | 88.0 | 7.16e-01 | 100.0% | 60.5% |
| 5035042 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.74 | 67.0 | 5.08e-01 | 100.0% | 51.3% |
| 5081314 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 65.0 | 5.00e-01 | 100.0% | 49.2% |
| 3387909 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.71 | 65.0 | 5.03e-01 | 100.0% | 62.4% |
| 3954129 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.71 | 66.0 | 5.10e-01 | 100.0% | 75.1% |
| 3963614 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.71 | 65.0 | 4.92e-01 | 100.0% | 68.1% |
| 3281544 | 2004.1.1.584 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat, Mg_chelatase | 0.71 | 64.0 | 5.03e-01 | 99.1% | 71.8% |
| 5051024 | 2004.1.1.155 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3 | 0.70 | 63.0 | 5.46e-01 | 98.3% | 80.6% |
| 5051791 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.70 | 63.0 | 5.33e-01 | 97.4% | 74.1% |
| 3839782 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.70 | 63.0 | 4.86e-01 | 100.0% | 70.4% |
| 4314819 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.70 | 63.0 | 5.33e-01 | 100.0% | 66.7% |
| 4134156 | 2004.1.1.125 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N | 0.69 | 61.0 | 5.48e-01 | 94.9% | 75.6% |
| 3166204 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.69 | 63.0 | 5.00e-01 | 100.0% | 69.4% |
| None | — | 0.69 | 61.0 | 5.46e-01 | 94.9% | 75.6% | |
| 5006563 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.69 | 60.0 | 4.64e-01 | 94.0% | 69.8% |
| 5036693 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.69 | 60.0 | 5.12e-01 | 94.0% | 75.1% |
| 5053049 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.69 | 62.0 | 5.31e-01 | 98.3% | 80.0% |
| 4030223 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.69 | 62.0 | 4.73e-01 | 99.1% | 57.0% |
| None | — | 0.69 | 60.0 | 5.29e-01 | 94.0% | 70.6% | |
| None | — | 0.69 | 60.0 | 5.40e-01 | 94.0% | 75.0% | |
| None | — | 0.69 | 60.0 | 5.40e-01 | 94.0% | 75.0% | |
| 3197159 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 62.0 | 4.18e-01 | 99.1% | 36.7% |
| None | — | 0.69 | 60.0 | 5.27e-01 | 94.0% | 70.6% | |
| None | — | 0.69 | 61.0 | 4.21e-01 | 99.1% | 37.3% | |
| 3476274 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.69 | 61.0 | 4.67e-01 | 99.1% | 55.6% |
| None | — | 0.69 | 61.0 | 4.05e-01 | 99.1% | 31.5% | |
| 4974815 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 59.0 | 5.00e-01 | 94.0% | 70.3% |
| 3256248 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.69 | 47.0 | 4.44e-01 | 80.3% | 58.6% |
| 4078827 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.69 | 61.0 | 4.56e-01 | 99.1% | 51.3% |
| None | — | 0.68 | 61.0 | 4.38e-01 | 99.1% | 44.0% | |
| 3975473 | 2004.1.1.136 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927 | 0.68 | 62.0 | 4.62e-01 | 100.0% | 45.2% |
| 3695173 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.68 | 61.0 | 4.56e-01 | 99.1% | 52.0% |
| None | — | 0.68 | 62.0 | 5.41e-01 | 99.1% | 70.9% | |
| 4069782 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 62.0 | 4.76e-01 | 100.0% | 60.4% |
| None | — | 0.68 | 62.0 | 5.31e-01 | 98.3% | 68.9% | |
| 3677397 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 61.0 | 4.01e-01 | 99.1% | 31.2% |
| None | — | 0.68 | 60.0 | 5.07e-01 | 94.9% | 63.7% | |
| None | — | 0.68 | 61.0 | 5.38e-01 | 97.4% | 71.8% | |
| 4013468 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 61.0 | 4.64e-01 | 99.1% | 57.1% |
| 3465917 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 61.0 | 4.05e-01 | 99.1% | 31.9% |
| 3594046 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 61.0 | 4.71e-01 | 99.1% | 58.8% |
| 4017535 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.68 | 61.0 | 4.48e-01 | 100.0% | 66.3% |
| 5025359 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.68 | 61.0 | 4.62e-01 | 99.1% | 56.0% |
| 3255516 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.68 | 61.0 | 4.57e-01 | 99.1% | 53.3% |
| 3481498 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.67 | 61.0 | 4.56e-01 | 99.1% | 52.3% |
| 3618122 | 2004.1.1.55 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase | 0.67 | 61.0 | 5.10e-01 | 98.3% | 60.0% |
| 3594982 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.67 | 61.0 | 4.70e-01 | 100.0% | 57.7% |
| 3495061 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.67 | 61.0 | 4.65e-01 | 100.0% | 58.5% |
| 3611910 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.67 | 60.0 | 4.58e-01 | 99.1% | 54.2% |
| 4224436 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 60.0 | 4.63e-01 | 98.3% | 90.4% |
| None | — | 0.67 | 60.0 | 4.18e-01 | 99.1% | 39.5% | |
| 3550992 | 2004.1.1.418 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase | 0.67 | 59.0 | 4.60e-01 | 99.1% | 58.9% |
| 4994590 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 60.0 | 4.95e-01 | 100.0% | 68.6% |
| 4998586 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 60.0 | 4.95e-01 | 100.0% | 57.6% |
| 5034518 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.66 | 58.0 | 4.72e-01 | 94.9% | 60.9% |
| 3703312 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 60.0 | 4.12e-01 | 99.1% | 37.0% |
| 3377628 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.66 | 57.0 | 4.89e-01 | 94.9% | 77.4% |
| 4926850 | 2004.1.1.22 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat | 0.65 | 58.0 | 5.32e-01 | 98.3% | 74.2% |
| 4982916 | 247.1.1.53 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Beta-Casp | 0.65 | 50.0 | 4.25e-01 | 81.2% | 99.5% |
| 3575760 | 2004.1.1.183 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 | 0.65 | 59.0 | 5.12e-01 | 99.1% | 69.1% |
| 3711499 | 2004.1.1.183 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 | 0.65 | 57.0 | 4.91e-01 | 95.7% | 63.3% |
| None | — | 0.64 | 56.0 | 4.96e-01 | 99.1% | 90.3% | |
| 4382431 | 2004.1.1.296 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_bind | 0.61 | 55.0 | 4.34e-01 | 100.0% | 56.4% |
| 5062968 | 2003.1.1.384 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Beta-Casp | 0.61 | 44.0 | 3.82e-01 | 87.2% | 48.9% |
| 4948018 | 2004.1.1.820 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM_lid | 0.61 | 54.0 | 4.35e-01 | 98.3% | 63.9% |
| 3597979 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 49.0 | 3.94e-01 | 100.0% | 92.1% |
| 3653298 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.55 | 49.0 | 4.21e-01 | 99.1% | 64.7% |
| 4890998 | 148.1.3.28 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 | 0.54 | 43.0 | 3.26e-01 | 87.2% | 34.6% |
| 3312286 | 207.1.1.134 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 | 0.51 | 40.0 | 2.81e-01 | 84.6% | 61.0% |