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OP009284.1__UUV44751.1__RCPERIPETEIA_80__00080
Bact-VirOP009284.1__UUV44751.1__RCPERIPETEIA_80__00080
Identity
- Accession:
- OP009284 ↗
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Taxonomy
TaxID: 2970526
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-75
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 36.0 | 3.18e-01 | 82.4% | 29.8% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.71 | 61.0 | 5.61e-01 | 97.1% | 97.8% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 39.0 | 3.79e-01 | 94.1% | 58.1% |
| 2o5rA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.59 | 37.0 | 4.12e-01 | 94.1% | 87.5% |
| 1vp4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 45.0 | 3.27e-01 | 88.2% | 79.5% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 38.0 | 4.46e-01 | 92.6% | 100.0% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 47.0 | 4.15e-01 | 92.6% | 86.5% |
| 5wt3A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 4.10e-01 | 88.2% | 80.0% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 4.28e-01 | 95.6% | 81.4% |
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 4.38e-01 | 91.2% | 85.1% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.56 | 40.0 | 4.04e-01 | 97.1% | 79.1% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 41.0 | 4.23e-01 | 97.1% | 84.8% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.55 | 49.0 | 4.40e-01 | 100.0% | 80.2% |
| 2vd3A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 4.22e-01 | 91.2% | 78.4% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 42.0 | 3.86e-01 | 91.2% | 61.0% |
| 5ar1A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 2.87e-01 | 80.9% | 63.7% |
| 4qbuA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.54 | 42.0 | 4.25e-01 | 88.2% | 90.9% |
| 7agpA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.53 | 39.0 | 4.05e-01 | 88.2% | 93.4% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 38.0 | 4.08e-01 | 91.2% | 96.4% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 4.22e-01 | 92.6% | 94.8% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 40.0 | 3.31e-01 | 85.3% | 47.0% |
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.52 | 38.0 | 2.98e-01 | 79.4% | 64.2% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.52 | 41.0 | 4.06e-01 | 91.2% | 84.5% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.51 | 41.0 | 3.60e-01 | 95.6% | 94.0% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.89e-01 | 97.1% | 91.8% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.51 | 38.0 | 3.67e-01 | 94.1% | 71.2% |
| 2zbcA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.51 | 40.0 | 3.92e-01 | 95.6% | 83.6% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.50 | 42.0 | 3.12e-01 | 97.1% | 39.8% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 139279 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.80 | 36.0 | 3.18e-01 | 82.4% | 29.8% |
| 3787269 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.77 | 35.0 | 2.92e-01 | 82.4% | 25.5% |
| 1167933 | 101.1.11.5 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › Arc | 0.70 | 47.0 | 4.93e-01 | 100.0% | 78.3% |
| 4963823 | 304.126.1.9 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › VNG_1110C | 0.64 | 47.0 | 5.10e-01 | 100.0% | 96.4% |
| 4948478 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.63 | 52.0 | 5.41e-01 | 100.0% | 96.9% |
| 4415182 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.62 | 51.0 | 4.51e-01 | 92.6% | 80.0% |
| 4994750 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.60 | 44.0 | 4.66e-01 | 88.2% | 90.0% |
| 1481304 | 304.5.1.4 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CdAMP_rec | 0.59 | 44.0 | 4.70e-01 | 95.6% | 94.8% |
| 3170501 | 327.19.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain | 0.59 | 52.0 | 4.74e-01 | 100.0% | 76.7% |
| 5059195 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.58 | 45.0 | 4.72e-01 | 100.0% | 96.7% |
| 3272247 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.57 | 45.0 | 3.59e-01 | 86.8% | 44.8% |
| 5077094 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.57 | 45.0 | 4.15e-01 | 91.2% | 65.6% |
| 4160448 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.57 | 44.0 | 2.69e-01 | 83.8% | 78.1% |
| 4202472 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.57 | 43.0 | 4.33e-01 | 95.6% | 81.4% |
| 4168509 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.57 | 44.0 | 4.31e-01 | 91.2% | 78.1% |
| 4997352 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.56 | 43.0 | 4.05e-01 | 89.7% | 67.5% |
| 5075233 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.56 | 43.0 | 4.17e-01 | 95.6% | 74.7% |
| 3449952 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 45.0 | 4.21e-01 | 100.0% | 71.1% |
| 5050539 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 41.0 | 4.14e-01 | 95.6% | 80.0% |
| 5047006 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 42.0 | 3.71e-01 | 92.6% | 53.6% |
| 4567408 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.55 | 42.0 | 4.22e-01 | 95.6% | 81.4% |
| 3288007 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 44.0 | 4.28e-01 | 89.7% | 97.3% |
| 4011265 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.55 | 42.0 | 4.25e-01 | 91.2% | 81.4% |
| 4942002 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.55 | 46.0 | 4.49e-01 | 95.6% | 89.3% |
| 4227861 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.54 | 43.0 | 4.20e-01 | 88.2% | 78.7% |
| 4981661 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.54 | 43.0 | 4.02e-01 | 95.6% | 70.6% |
| 3581763 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 41.0 | 4.14e-01 | 97.1% | 84.3% |
| 1790206 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.54 | 40.0 | 3.35e-01 | 85.3% | 45.9% |
| 3838183 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 37.0 | 3.96e-01 | 97.1% | 89.1% |
| 4669972 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 43.0 | 3.73e-01 | 91.2% | 55.5% |
| 4938102 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 40.0 | 4.05e-01 | 95.6% | 81.4% |
| 4928456 | 306.6.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like | 0.53 | 42.0 | 4.30e-01 | 100.0% | 93.8% |
| 3920472 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 39.0 | 4.14e-01 | 100.0% | 93.3% |
| 4937548 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.53 | 39.0 | 4.16e-01 | 100.0% | 100.0% |
| 4109303 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.53 | 40.0 | 3.89e-01 | 100.0% | 74.7% |
| 4943544 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 41.0 | 4.08e-01 | 100.0% | 85.7% |
| 3398922 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.52 | 42.0 | 3.87e-01 | 94.1% | 67.8% |
| 5075417 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 38.0 | 3.25e-01 | 77.9% | 73.9% |
| 3470534 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.52 | 40.0 | 2.72e-01 | 86.8% | 23.7% |
| 3802146 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 41.0 | 3.58e-01 | 94.1% | 55.5% |
| 5045936 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 38.0 | 3.99e-01 | 100.0% | 98.3% |
| 4946891 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 40.0 | 4.03e-01 | 91.2% | 85.7% |
| 4008317 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 44.0 | 3.47e-01 | 98.5% | 58.6% |
| 5036862 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 38.0 | 3.87e-01 | 100.0% | 85.7% |
| 4976823 | 305.2.1.0 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) | 0.50 | 40.0 | 3.97e-01 | 98.5% | 84.0% |
| 4119221 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.50 | 40.0 | 4.08e-01 | 100.0% | 95.4% |
| 3522222 | 5001.1.1.43 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R | 0.50 | 36.0 | 2.60e-01 | 76.5% | 63.1% |
| 3463111 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.50 | 36.0 | 3.84e-01 | 88.2% | 86.7% |