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OP009285.1__UUV44769.1__RCRUDOLPH_2__00002

Bact-Vir

OP009285.1__UUV44769.1__RCRUDOLPH_2__00002

Identity

Accession:
OP009285 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcRudolph

TaxID: 2970527

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
Domain cluster: rep: MW677525.1__QXN72396.1__RCSIMONEHASTD_67__00067__D2-76
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.13e-01 96.7% 83.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.05e-01 95.0% 86.7%
3cdxD00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 39.0 2.53e-01 80.0% 50.3%
2h5eA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.92e-01 88.3% 49.2%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.82e-01 96.7% 73.5%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.32e-01 90.0% 85.6%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.92e-01 96.7% 90.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.94e-01 96.7% 93.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4047032 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.73 52.0 3.18e-01 75.0% 54.4%
3644081 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.63 44.0 3.33e-01 75.0% 72.0%
3676956 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.62 44.0 3.00e-01 75.0% 48.7%
3077669 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.61 45.0 4.43e-01 80.0% 72.7%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.57 45.0 3.53e-01 90.0% 65.7%
3730294 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.55 45.0 4.17e-01 98.3% 70.0%
3889992 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.54 41.0 3.05e-01 91.7% 31.2%
4493478 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.54 41.0 3.39e-01 96.7% 41.5%
3945489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.95e-01 93.3% 96.0%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.52 41.0 3.82e-01 96.7% 69.4%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.52 41.0 3.85e-01 96.7% 80.0%
3706223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.39e-01 86.7% 52.4%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.51 44.0 3.64e-01 100.0% 73.0%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.85e-01 96.7% 82.8%
3233110 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.51 42.0 3.67e-01 96.7% 62.2%
4012639 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 45.0 3.68e-01 100.0% 83.6%
3595283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.22e-01 86.7% 48.7%
3788817 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.50 43.0 3.87e-01 98.3% 72.9%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 4.04e-01 96.7% 98.3%