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OP009285.1__UUV44796.1__RCRUDOLPH_29__00029
Bact-VirOP009285.1__UUV44796.1__RCRUDOLPH_29__00029
Identity
- Accession:
- OP009285 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-114
Domain cluster:
rep: NC_073094.1__YP_010742931.1__QAY90_gp51__00051__D40-112
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10983.14 best | DUF2793 | 85.1 | 3.50e-24 | 93.7% | 83.9% |
D2
high
residues 412-460
Domain cluster:
rep: OP009285.1__UUV44796.1__RCRUDOLPH_29__00029__D321-387
D3
medium
residues 321-387
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a0tA01 | 6.20.80.10 | Special › Other non-globular › Glycosyl hydrolase fold › | 0.79 | 56.0 | 5.88e-01 | 100.0% | 82.0% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 52.0 | 4.21e-01 | 97.0% | 57.6% |
| 2mhgA00 | 2.20.130.30 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 | 0.61 | 41.0 | 4.03e-01 | 82.1% | 62.7% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.61 | 51.0 | 3.91e-01 | 98.5% | 63.1% |
| 4mveA00 | 2.40.128.580 | Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain | 0.54 | 38.0 | 3.05e-01 | 83.6% | 35.4% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.53 | 43.0 | 3.48e-01 | 91.0% | 56.1% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 46.0 | 3.96e-01 | 100.0% | 81.7% |
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.50 | 38.0 | 2.95e-01 | 83.6% | 51.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185629 | 79.1.1.8 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › gp37_trimer | 0.67 | 57.0 | 5.03e-01 | 100.0% | 64.9% |
| 1099835 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.63 | 55.0 | 4.72e-01 | 97.0% | 73.6% |
| 5009374 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.60 | 44.0 | 2.61e-01 | 77.6% | 14.2% |
| 3957425 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 38.0 | 3.33e-01 | 71.6% | 40.9% |
| 3512316 | 5.1.5.69 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nbas_N | 0.57 | 42.0 | 2.67e-01 | 79.1% | 28.9% |
| 1512998 | 3953.1.1.1 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N | 0.55 | 39.0 | 3.62e-01 | 74.6% | 96.5% |
| 3706274 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.52 | 43.0 | 3.28e-01 | 100.0% | 56.8% |
| 3935038 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.51 | 38.0 | 3.68e-01 | 82.1% | 78.5% |
D4
medium
residues 466-498_517-606_668-679
Domain cluster:
rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544
D5
medium
residues 499-516_607-667
Domain cluster:
representative