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OP009285.1__UUV44829.1__RCRUDOLPH_62__00062

Bact-Vir

OP009285.1__UUV44829.1__RCRUDOLPH_62__00062

Identity

Accession:
OP009285 ↗
Kingdom:
phage

Quality

64.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcRudolph

TaxID: 2970527

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-130
PDB
D2 high residues 139-273
PDB
Domain cluster: rep: MK448585.1__QBX12008.1__JavanS625_0002__00014__D2-144
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k2yA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.85 63.0 7.23e-01 88.1% 100.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 31.0 4.11e-01 97.8% 78.5%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 33.0 4.24e-01 97.8% 79.5%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.66 29.0 3.37e-01 96.3% 54.5%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 31.0 4.05e-01 97.0% 78.5%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.56 28.0 3.44e-01 85.9% 74.4%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.91e-01 71.9% 81.0%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.50 35.0 2.81e-01 70.4% 94.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2072038 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.85 62.0 7.15e-01 86.7% 100.0%
3697243 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.83 58.0 5.96e-01 87.4% 74.6%
3310707 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.81 58.0 5.96e-01 83.0% 76.2%
2069093 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.81 60.0 6.21e-01 88.9% 81.0%
3330336 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.80 58.0 6.15e-01 83.7% 83.3%
3665217 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.80 59.0 5.84e-01 87.4% 72.9%
4952916 109.4.1.3613 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIRAN 0.79 58.0 4.30e-01 80.7% 33.9%
4954705 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.73 57.0 6.36e-01 80.7% 98.2%
3727266 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.72 55.0 5.64e-01 88.1% 82.3%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.68 30.0 2.86e-01 93.3% 34.8%
4446420 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.67 54.0 5.77e-01 87.4% 98.3%
4429352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 30.0 3.75e-01 94.8% 67.8%
4963598 1.1.7.150 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26503 0.66 30.0 3.86e-01 84.4% 74.7%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 30.0 3.96e-01 97.0% 77.5%
4372260 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.64 53.0 5.27e-01 87.4% 85.7%
3247934 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.60 35.0 4.17e-01 94.8% 82.1%
3259583 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.57 32.0 4.11e-01 100.0% 92.5%
3299946 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.54 36.0 3.89e-01 95.6% 80.0%
3704507 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 41.0 4.10e-01 83.7% 78.4%
4426056 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.53 42.0 4.07e-01 85.2% 92.3%
2832995 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.50 32.0 3.35e-01 80.7% 68.0%