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OP009285.1__UUV44842.1__RCRUDOLPH_75__00075
Bact-VirOP009285.1__UUV44842.1__RCRUDOLPH_75__00075
Identity
- Accession:
- OP009285 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-77
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7jw2A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.74 | 58.0 | 4.21e-01 | 85.3% | 38.1% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.73 | 55.0 | 5.50e-01 | 80.0% | 98.7% |
| 7jw6A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 59.0 | 4.19e-01 | 86.7% | 37.7% |
| 1yt3A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 58.0 | 4.29e-01 | 86.7% | 38.7% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.64 | 49.0 | 5.16e-01 | 88.0% | 95.5% |
| 1vwxk00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.62 | 49.0 | 5.03e-01 | 88.0% | 94.2% |
| 1bdp001 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 49.0 | 3.64e-01 | 86.7% | 35.1% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 45.0 | 3.84e-01 | 81.3% | 72.6% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.59 | 44.0 | 4.08e-01 | 80.0% | 83.5% |
| 5o99A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 34.0 | 3.69e-01 | 92.0% | 68.3% |
| 3e19B01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.59 | 39.0 | 4.18e-01 | 80.0% | 81.2% |
| 6ghmC02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 34.0 | 3.66e-01 | 70.7% | 67.2% |
| 4npsA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 4.67e-01 | 100.0% | 100.0% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 48.0 | 3.25e-01 | 93.3% | 31.2% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.58 | 44.0 | 3.83e-01 | 82.7% | 73.7% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 2.87e-01 | 80.0% | 32.6% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 34.0 | 3.57e-01 | 78.7% | 64.7% |
| 3bs1A00 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.55 | 42.0 | 3.85e-01 | 84.0% | 81.6% |
| 2egeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 34.0 | 3.42e-01 | 93.3% | 60.0% |
| 1y56A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 48.0 | 3.47e-01 | 100.0% | 77.9% |
| 4z88A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 32.0 | 3.40e-01 | 73.3% | 64.6% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 35.0 | 3.72e-01 | 74.7% | 75.4% |
| 5dcaA11 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 47.0 | 4.25e-01 | 97.3% | 91.4% |
| 4c3xA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.02e-01 | 100.0% | 98.1% |
| 2vgeA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.54 | 43.0 | 3.20e-01 | 89.3% | 63.3% |
| 4paaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 47.0 | 3.35e-01 | 100.0% | 80.0% |
| 1awoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 31.0 | 3.46e-01 | 70.7% | 73.7% |
| 5cmlA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 45.0 | 3.28e-01 | 98.7% | 67.9% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 37.0 | 3.95e-01 | 90.7% | 90.2% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 32.0 | 3.10e-01 | 76.0% | 52.4% |
| 3f8tA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.68e-01 | 76.0% | 90.0% |
| 1x43A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 32.0 | 3.39e-01 | 73.3% | 74.2% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.51 | 29.0 | 3.19e-01 | 88.0% | 70.9% |
| 3d6wB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 39.0 | 4.01e-01 | 86.7% | 90.0% |
| 1cjxA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 39.0 | 3.18e-01 | 85.3% | 92.0% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 31.0 | 3.28e-01 | 78.7% | 71.0% |
| 3r6aB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 38.0 | 3.27e-01 | 81.3% | 94.3% |
| 1yqeA01 | 3.40.630.50 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like | 0.50 | 46.0 | 3.39e-01 | 100.0% | 86.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2855777 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.66 | 48.0 | 5.07e-01 | 88.0% | 89.4% |
| 3877107 | 1170.1.1.3 ↗ | beta barrels › IL8-related › IL8-related › IL8 › CXCL16 | 0.65 | 50.0 | 5.07e-01 | 86.7% | 84.0% |
| 5074128 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.64 | 48.0 | 5.09e-01 | 88.0% | 93.8% |
| 3987903 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 43.0 | 4.52e-01 | 81.3% | 80.0% |
| 5048073 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.64 | 47.0 | 4.95e-01 | 88.0% | 92.3% |
| 3305371 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 41.0 | 3.86e-01 | 80.0% | 54.4% |
| 4334411 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.63 | 48.0 | 5.13e-01 | 88.0% | 96.9% |
| 185084 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.62 | 41.0 | 4.48e-01 | 76.0% | 84.7% |
| 3926701 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.62 | 36.0 | 3.77e-01 | 74.7% | 61.8% |
| None | — | 0.60 | 51.0 | 3.94e-01 | 94.7% | 60.0% | |
| None | — | 0.60 | 52.0 | 3.85e-01 | 97.3% | 62.1% | |
| 4414068 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.59 | 50.0 | 3.46e-01 | 94.7% | 67.8% |
| 4666011 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.59 | 45.0 | 4.50e-01 | 86.7% | 80.0% |
| 1280955 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 38.0 | 4.13e-01 | 88.0% | 83.6% |
| 3743864 | 109.4.1.1787 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III | 0.58 | 43.0 | 2.38e-01 | 81.3% | 7.0% |
| 4990231 | 220.1.1.319 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF2208 | 0.57 | 45.0 | 4.29e-01 | 88.0% | 74.4% |
| None | — | 0.56 | 47.0 | 3.37e-01 | 96.0% | 67.8% | |
| 4263405 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.55 | 38.0 | 4.19e-01 | 93.3% | 100.0% |
| 4483819 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.55 | 32.0 | 3.34e-01 | 73.3% | 58.6% |
| 3496925 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.55 | 46.0 | 3.33e-01 | 96.0% | 70.4% |
| 3205524 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.54 | 48.0 | 3.18e-01 | 100.0% | 55.2% |
| 3394669 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.54 | 47.0 | 2.94e-01 | 100.0% | 97.9% |
| 4028520 | 192.4.1.34 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Pescadillo_N | 0.54 | 47.0 | 3.78e-01 | 98.7% | 88.7% |
| 3186404 | 3441.1.1.2 ↗ | alpha bundles › Bc28.1 › Bc28.1 › Bc28.1 › Pescadillo_N | 0.53 | 47.0 | 3.82e-01 | 98.7% | 92.1% |
| 4171382 | 295.1.1.12 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0231 | 0.53 | 44.0 | 3.76e-01 | 90.7% | 99.2% |
| 3270547 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.52 | 31.0 | 3.31e-01 | 94.7% | 66.2% |
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.52 | 29.0 | 3.38e-01 | 89.3% | 88.4% |
| 4590724 | 3291.1.1.163 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Pescadillo_N | 0.52 | 46.0 | 3.72e-01 | 98.7% | 88.3% |
| 3214149 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.52 | 33.0 | 3.48e-01 | 94.7% | 73.8% |
| 3925408 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 31.0 | 3.39e-01 | 72.0% | 84.0% |
| 5051713 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.51 | 37.0 | 3.01e-01 | 74.7% | 95.1% |
| 3269589 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.51 | 31.0 | 3.19e-01 | 77.3% | 61.4% |
| 3508699 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.50 | 39.0 | 3.17e-01 | 86.7% | 79.4% |
| 4292847 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.50 | 43.0 | 2.77e-01 | 100.0% | 37.8% |
D2
medium
residues 85-124