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OP009286.1__UUV44895.1__RCSWAN_42__00042

Bact-Vir

OP009286.1__UUV44895.1__RCSWAN_42__00042

Identity

Accession:
OP009286 ↗
Kingdom:
phage

Quality

77.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-114
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.81 66.0 6.40e-01 100.0% 80.0%
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.77 52.0 4.35e-01 100.0% 40.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.75 60.0 5.29e-01 100.0% 60.6%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.75 57.0 5.60e-01 100.0% 79.6%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 50.0 3.04e-01 100.0% 10.9%
4aybP00 2.20.28.30 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L 0.69 48.0 4.89e-01 97.8% 75.0%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.67 46.0 4.89e-01 100.0% 86.8%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.67 47.0 4.90e-01 100.0% 89.5%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.66 45.0 3.37e-01 100.0% 26.4%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 55.0 5.21e-01 100.0% 81.8%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 49.0 3.79e-01 100.0% 37.4%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 47.0 3.65e-01 100.0% 34.9%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 46.0 3.64e-01 100.0% 35.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 52.0 3.61e-01 100.0% 44.3%
1bpvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 3.65e-01 100.0% 37.5%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.61 50.0 3.99e-01 100.0% 43.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 50.0 4.09e-01 100.0% 51.1%
2j9uB00 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.60 52.0 5.14e-01 100.0% 97.9%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.60 48.0 4.10e-01 100.0% 92.9%
2je8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 42.0 2.80e-01 100.0% 18.2%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 45.0 4.15e-01 100.0% 65.6%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 48.0 4.90e-01 100.0% 100.0%
4jysB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 46.0 3.65e-01 100.0% 64.0%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 48.0 3.35e-01 100.0% 36.7%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.57 46.0 4.54e-01 100.0% 88.0%
3ni2A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.57 46.0 2.66e-01 91.1% 14.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 49.0 3.96e-01 100.0% 94.4%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 48.0 3.87e-01 100.0% 57.0%
4lizA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 40.0 3.01e-01 100.0% 26.8%
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 48.0 3.81e-01 100.0% 92.9%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.61e-01 86.7% 35.7%
1f6fB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.57e-01 100.0% 43.3%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 35.0 2.88e-01 75.6% 31.1%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 40.0 3.21e-01 88.9% 35.5%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 44.0 3.07e-01 100.0% 51.6%
1zakA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 2.80e-01 88.9% 92.3%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.54 44.0 3.65e-01 97.8% 95.7%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.65e-01 100.0% 52.7%
3bp6B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.43e-01 97.8% 77.6%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 3.02e-01 80.0% 81.9%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 2.93e-01 86.7% 32.2%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 2.82e-01 86.7% 88.6%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 41.0 3.12e-01 100.0% 33.6%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 44.0 3.86e-01 100.0% 63.4%
3lyrA00 2.60.40.3180 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription factor COE1, DNA-binding domain 0.52 43.0 2.85e-01 100.0% 47.9%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 39.0 2.35e-01 88.9% 26.5%
3ue3A02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 38.0 2.89e-01 95.6% 35.9%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 37.0 2.85e-01 100.0% 55.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038202 102.1.1.11 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.88 52.0 3.65e-01 100.0% 21.8%
5013997 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 60.0 6.01e-01 97.8% 73.3%
4933180 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 55.0 6.18e-01 100.0% 88.6%
4946938 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 53.0 6.15e-01 95.6% 100.0%
4666101 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 58.0 5.85e-01 100.0% 75.6%
4979655 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.81 69.0 4.90e-01 100.0% 33.6%
3188296 375.1.1.132 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOB1_Zn_bind 0.80 54.0 4.93e-01 100.0% 53.3%
3277720 375.1.1.185 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.79 59.0 6.21e-01 100.0% 92.5%
4953501 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 58.0 6.10e-01 100.0% 92.5%
4993851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 59.0 5.95e-01 100.0% 86.7%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.77 65.0 4.59e-01 100.0% 31.7%
4928621 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.76 66.0 4.64e-01 100.0% 32.1%
4970537 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 54.0 5.61e-01 100.0% 87.5%
3598330 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 63.0 4.29e-01 100.0% 26.2%
4943252 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.75 63.0 4.50e-01 100.0% 31.0%
4931152 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 51.0 5.59e-01 100.0% 91.4%
5048049 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 54.0 5.67e-01 100.0% 90.0%
4979507 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.73 62.0 4.36e-01 100.0% 30.9%
5065792 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.73 59.0 4.17e-01 100.0% 27.7%
4982450 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.73 59.0 4.28e-01 100.0% 33.3%
4028011 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 58.0 5.83e-01 100.0% 91.1%
4554731 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.73 54.0 3.44e-01 100.0% 16.1%
4956096 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 65.0 5.53e-01 100.0% 90.0%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.71 59.0 4.25e-01 100.0% 31.2%
4929321 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 51.0 4.71e-01 100.0% 58.3%
3896840 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.71 52.0 5.46e-01 100.0% 92.5%
4021767 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.71 54.0 5.59e-01 100.0% 95.0%
3604593 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 59.0 5.65e-01 100.0% 81.8%
4928962 375.5.1.0 few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like 0.70 51.0 4.71e-01 100.0% 60.0%
3388528 7056.1.1.0 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.70 51.0 5.26e-01 100.0% 92.5%
2507149 375.1.1.48 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF35_N 0.69 49.0 5.43e-01 100.0% 97.1%
5068907 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 54.0 5.46e-01 97.8% 88.9%
5015962 375.1.1.64 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.69 52.0 5.04e-01 100.0% 74.0%
4929347 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 58.0 5.54e-01 100.0% 96.4%
3415761 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.68 51.0 5.00e-01 100.0% 76.0%
5066701 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 54.0 5.61e-01 100.0% 100.0%
4039609 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 61.0 5.34e-01 100.0% 93.8%
5022472 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 60.0 5.45e-01 100.0% 88.3%
4163860 375.1.1.199 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MJ0401 0.67 60.0 6.03e-01 100.0% 100.0%
3940425 375.1.1.128 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.66 49.0 5.06e-01 100.0% 95.0%
3485196 7056.1.1.3 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.66 49.0 4.54e-01 100.0% 63.3%
3475783 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.66 47.0 4.98e-01 95.6% 100.0%
5030632 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 55.0 5.52e-01 100.0% 95.6%
3543316 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.64 54.0 3.14e-01 100.0% 10.5%
5074679 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.64 56.0 4.05e-01 100.0% 36.2%
4943977 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 50.0 5.25e-01 100.0% 100.0%
5065401 2500.1.1.5 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD 0.63 52.0 2.92e-01 100.0% 6.7%
4990489 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 53.0 5.22e-01 100.0% 90.0%
3206604 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 43.0 4.64e-01 100.0% 97.1%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 50.0 4.71e-01 100.0% 85.0%
4056467 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 54.0 4.93e-01 100.0% 95.0%
8005 375.1.1.57 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N 0.60 52.0 5.14e-01 100.0% 97.9%
3596753 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 49.0 4.85e-01 100.0% 94.0%
3278358 284.3.1.2 a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › DUF7683 0.59 48.0 4.21e-01 100.0% 96.0%
4985088 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.58 46.0 3.57e-01 100.0% 62.6%
3397821 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 2.95e-01 86.7% 63.7%
3614660 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.56 41.0 2.62e-01 100.0% 13.7%
3925856 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.54e-01 100.0% 53.9%
4001801 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.56 45.0 3.48e-01 100.0% 59.2%
3445562 10.32.1.212 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.56 45.0 3.09e-01 100.0% 29.3%
3743053 3628.1.1.1 a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC 0.55 48.0 3.17e-01 100.0% 23.8%
3918242 3628.1.1.1 a+b complex topology › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › Transcription factor tau 60 kDa subunit › zf-TFIIIC 0.53 42.0 2.82e-01 95.6% 55.2%
3263784 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 2.87e-01 100.0% 39.7%
3998356 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 39.0 3.95e-01 100.0% 91.1%