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OP009286.1__UUV44898.1__RCSWAN_45__00045

Bact-Vir

OP009286.1__UUV44898.1__RCSWAN_45__00045

Identity

Accession:
OP009286 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcSwan

TaxID: 2970528

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-121
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.67 40.0 3.82e-01 100.0% 51.2%
6s8bA01 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.63 43.0 3.92e-01 70.8% 100.0%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.63 46.0 4.13e-01 76.4% 98.6%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.61 37.0 4.57e-01 72.6% 95.5%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 37.0 3.55e-01 77.4% 51.6%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.59 37.0 3.66e-01 100.0% 59.5%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 4.49e-01 100.0% 67.1%
3v2lA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.58 40.0 3.85e-01 70.8% 100.0%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 32.0 3.23e-01 84.9% 53.8%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 44.0 4.11e-01 100.0% 66.4%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 3.83e-01 86.8% 73.0%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 31.0 3.50e-01 82.1% 66.3%
6okdA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.56 38.0 3.49e-01 100.0% 53.2%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.55 35.0 3.53e-01 78.3% 63.2%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 50.0 3.73e-01 100.0% 65.3%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.55 28.0 2.84e-01 92.5% 45.9%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.54 39.0 3.82e-01 97.2% 70.8%
4akgA14 1.20.1280.160 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.54 39.0 3.95e-01 77.4% 100.0%
1okcA00 1.50.40.10 Mainly Alpha › Alpha/alpha barrel › Mitochondrial carrier fold › Mitochondrial carrier domain 0.53 46.0 3.47e-01 100.0% 89.7%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 40.0 3.29e-01 92.5% 43.1%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 35.0 3.37e-01 89.6% 60.2%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 39.0 3.66e-01 100.0% 61.0%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 37.0 4.23e-01 98.1% 100.0%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.52 40.0 3.90e-01 80.2% 77.2%
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 37.0 3.53e-01 73.6% 91.9%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 39.0 3.64e-01 86.8% 61.7%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 37.0 4.18e-01 98.1% 100.0%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 43.0 4.07e-01 92.5% 99.2%
1pxyB03 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.51 36.0 3.50e-01 72.6% 79.7%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 42.0 3.90e-01 100.0% 69.5%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.51 38.0 4.08e-01 96.2% 90.1%
4w8kA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.50 36.0 2.93e-01 74.5% 58.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3798235 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 50.0 5.73e-01 73.6% 95.0%
3791059 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.72 51.0 5.11e-01 74.5% 70.9%
54721 601.26.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like 0.67 40.0 3.82e-01 100.0% 51.2%
4977335 604.12.1.139 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF1844 0.65 41.0 4.57e-01 97.2% 80.7%
3405261 604.22.1.1 ↗ alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N 0.60 36.0 3.44e-01 92.5% 52.5%
3942162 1079.1.1.8 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.59 44.0 3.62e-01 77.4% 83.2%
5011384 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.59 42.0 3.31e-01 72.6% 44.9%
3596071 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 46.0 4.77e-01 84.0% 100.0%
3266150 620.1.1.0 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.58 44.0 3.99e-01 79.2% 93.6%
None — 0.56 51.0 3.48e-01 100.0% 46.7%
3715373 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 47.0 4.29e-01 91.5% 85.7%
3787590 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.55 44.0 2.85e-01 84.0% 72.2%
5079853 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.54 39.0 3.67e-01 100.0% 60.8%
5040355 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.54 37.0 3.57e-01 100.0% 60.0%
3965374 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 37.0 3.11e-01 70.8% 80.0%
3326952 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.53 42.0 2.83e-01 85.8% 71.6%
3955107 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.52 41.0 3.61e-01 100.0% 56.8%
3984409 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.52 42.0 2.82e-01 85.8% 65.3%
5060951 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.52 47.0 3.16e-01 100.0% 91.8%
3450659 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.52 44.0 2.90e-01 91.5% 88.7%
3410758 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.52 41.0 2.77e-01 85.8% 69.8%
3285714 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.51 33.0 3.33e-01 100.0% 64.8%
1759309 601.13.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › Flagellin_C,FliS 0.51 42.0 3.67e-01 91.5% 91.5%
3259867 1188.1.1.1 ↗ alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.51 39.0 3.01e-01 82.1% 74.6%
3470477 1076.1.1.2 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Aph-1 0.50 44.0 3.40e-01 95.3% 51.1%
D2 high residues 162-243
PDB
Domain cluster: rep: MW677529.1__QXN72695.1__RCZAHN_86__00086__D113-235
D3 high residues 257-317
PDB