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OP018999.1__UVD33052.1__X__00001

Bact-Vir

OP018999.1__UVD33052.1__X__00001

Identity

Accession:
OP018999 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Rodentiumvirus› Escherichia_phage_NTNC80A

TaxID: 2970325

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 186-271
PDB
Domain cluster: rep: OP172637.1__WAX05372.1__AC844P3_00043__00043__D819-906
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 86.0 6.77e-01 100.0% 80.7%
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 82.0 7.22e-01 96.5% 90.8%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.68e-01 87.2% 100.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.13e-01 100.0% 57.0%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.94e-01 100.0% 49.4%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 31.0 3.50e-01 82.6% 69.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.18e-01 100.0% 63.8%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 47.0 4.37e-01 94.2% 86.0%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 46.0 3.34e-01 100.0% 84.9%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.51e-01 90.7% 98.4%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.06e-01 100.0% 67.9%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.03e-01 100.0% 61.9%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.07e-01 100.0% 66.2%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.53 32.0 3.75e-01 82.6% 89.5%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.12e-01 93.0% 85.4%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.53 39.0 3.76e-01 80.2% 78.2%
1loxA01 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.52 45.0 2.96e-01 100.0% 57.1%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 40.0 3.91e-01 86.0% 81.0%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.93e-01 100.0% 63.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 30.0 3.64e-01 76.7% 89.5%
3hvwA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 36.0 2.99e-01 74.4% 65.4%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.79e-01 100.0% 62.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1683846 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.94 90.0 7.73e-01 100.0% 88.8%
382463 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.89 82.0 7.22e-01 97.7% 90.0%
379864 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.61 48.0 4.25e-01 100.0% 58.6%
3499106 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 52.0 3.38e-01 98.8% 72.9%
5071300 601.27.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like 0.60 44.0 3.43e-01 76.7% 61.7%
3497680 5054.1.1.63 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.58 51.0 3.40e-01 98.8% 36.7%
3223508 601.42.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain 0.57 47.0 3.84e-01 90.7% 76.4%
3624382 601.42.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain 0.57 45.0 3.72e-01 88.4% 77.6%
4984581 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.54 43.0 3.45e-01 84.9% 58.8%
4011979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.89e-01 94.2% 61.6%
3593675 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.80e-01 96.5% 85.0%
4934352 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 45.0 3.61e-01 95.3% 50.9%
3991594 601.42.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain 0.52 43.0 3.47e-01 90.7% 57.1%
5031515 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.52 46.0 4.46e-01 100.0% 92.6%
3428027 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 43.0 3.75e-01 93.0% 65.9%
3612943 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.52 40.0 3.50e-01 83.7% 90.4%
3451111 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 43.0 3.73e-01 98.8% 66.7%
3315363 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 41.0 3.49e-01 93.0% 57.5%
3652603 101.1.2.516 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25895 0.51 40.0 3.79e-01 91.9% 70.0%
3297063 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.98e-01 93.0% 91.0%
3985490 192.2.1.5 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.50 40.0 3.56e-01 98.8% 59.7%
4962334 150.1.2.7 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › PaaA_PaaC 0.50 42.0 3.03e-01 98.8% 33.6%
4934384 101.1.2.947 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27234 0.50 41.0 4.19e-01 90.7% 100.0%
D2 medium residues 65-144
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.63 40.0 3.65e-01 78.8% 47.7%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.59 50.0 2.96e-01 95.0% 18.3%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.59 43.0 3.44e-01 77.5% 77.8%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 3.90e-01 98.8% 96.2%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.57 49.0 3.62e-01 100.0% 69.9%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 41.0 2.89e-01 80.0% 60.3%
3my2A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.56 50.0 4.27e-01 98.8% 92.1%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.56 49.0 4.25e-01 98.8% 97.6%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.55 40.0 3.41e-01 81.2% 55.2%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.53 48.0 3.85e-01 100.0% 88.4%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 3.00e-01 98.8% 55.9%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.99e-01 100.0% 66.0%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 46.0 3.14e-01 100.0% 51.8%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 37.0 2.83e-01 78.8% 77.5%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.92e-01 100.0% 64.2%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 42.0 3.07e-01 98.8% 65.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1780243 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.71 51.0 3.56e-01 76.2% 39.3%
3559319 101.1.11.134 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Sarcoglycan_1 0.68 46.0 5.22e-01 72.5% 93.3%
3583042 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.67 54.0 4.47e-01 87.5% 54.3%
4499276 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.65 55.0 5.51e-01 90.0% 97.5%
4465258 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.63 54.0 5.03e-01 95.0% 75.0%
3561693 77.1.1.2 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.61 54.0 4.42e-01 98.8% 57.3%
3242234 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 42.0 2.57e-01 71.2% 41.0%
3932040 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.60 55.0 5.52e-01 100.0% 100.0%
4119187 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.59 50.0 2.82e-01 92.5% 9.9%
3411216 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.59 53.0 4.94e-01 100.0% 80.0%
3965131 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.58 50.0 4.88e-01 98.8% 97.8%
4441857 3347.1.1.6 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531, TEN_YD-shell 0.57 47.0 2.96e-01 88.7% 22.3%
4570038 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.56 46.0 2.58e-01 90.0% 9.4%
3767876 79.1.1.18 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 0.56 49.0 4.08e-01 100.0% 55.2%
4200177 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.55 47.0 4.08e-01 97.5% 75.4%
3263745 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 39.0 3.13e-01 73.8% 63.4%
3461115 207.1.1.103 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.54 47.0 3.18e-01 96.2% 34.7%
4969784 3425.2.1.0 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.54 38.0 2.62e-01 73.8% 47.2%
4390281 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.54 46.0 4.12e-01 100.0% 86.7%
5069690 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 36.0 3.93e-01 70.0% 100.0%
3441806 207.1.1.103 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.52 46.0 2.97e-01 100.0% 38.0%
5022885 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.52 44.0 2.84e-01 100.0% 56.0%
3447378 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 44.0 3.17e-01 100.0% 53.5%