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OP028995.1__UUJ74480.1__X__00003
Bact-VirOP028995.1__UUJ74480.1__X__00003
Identity
- Accession:
- OP028995 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Taxonomy
TaxID: 2969983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-60
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.78 | 67.0 | 5.70e-01 | 94.3% | 92.9% |
| 6khjH01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.69 | 59.0 | 3.57e-01 | 100.0% | 61.9% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 59.0 | 5.17e-01 | 100.0% | 90.2% |
| 3hruB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 57.0 | 4.43e-01 | 100.0% | 55.2% |
| 7n1nB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 52.0 | 4.95e-01 | 86.8% | 100.0% |
| 6u8yL01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.65 | 57.0 | 3.45e-01 | 100.0% | 59.0% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.62 | 54.0 | 3.87e-01 | 100.0% | 56.9% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.61 | 46.0 | 3.43e-01 | 83.0% | 73.2% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.61 | 51.0 | 4.71e-01 | 96.2% | 95.8% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 3.81e-01 | 98.1% | 47.8% |
| 1uddA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.60 | 50.0 | 3.44e-01 | 100.0% | 83.7% |
| 2in3A02 | 1.10.472.60 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › putative protein disulfide isomerase domain | 0.59 | 47.0 | 3.71e-01 | 92.5% | 56.9% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 47.0 | 3.42e-01 | 88.7% | 55.2% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 37.0 | 3.89e-01 | 73.6% | 74.5% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 44.0 | 4.24e-01 | 98.1% | 97.0% |
| 3ziuA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.55 | 49.0 | 3.17e-01 | 100.0% | 37.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225754 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.78 | 60.0 | 4.90e-01 | 83.0% | 66.3% |
| 4991136 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.73 | 54.0 | 5.19e-01 | 79.2% | 85.0% |
| 3945581 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.62 | 39.0 | 3.90e-01 | 96.2% | 61.8% |
| 4672787 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.58 | 36.0 | 3.53e-01 | 100.0% | 55.0% |
| 5052262 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 43.0 | 3.85e-01 | 84.9% | 98.7% |
D2
high
residues 213-384
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07728.21 best | AAA_5 | 64.3 | 1.70e-17 | 82.6% | 76.3% |
| PF07724.21 | AAA_2 | 27.1 | 5.60e-06 | 65.7% | 60.2% |
| PF00004.36 | AAA | 26.0 | 1.50e-05 | 45.4% | 48.1% |
D3
high
residues 390-504
Domain cluster:
rep: pig_ID_3640_F65_scaffold_23_curated_prodigal-single.1__X__X__00052__D308-394
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08406.17 best | CbbQ_C | 38.5 | 1.50e-09 | 73.0% | 78.8% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vkgB04 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.75 | 55.0 | 5.47e-01 | 77.4% | 95.9% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.64 | 46.0 | 5.12e-01 | 74.8% | 96.7% |
| 5ermB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 52.0 | 3.79e-01 | 87.8% | 86.6% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.60 | 29.0 | 3.17e-01 | 100.0% | 53.1% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.59 | 42.0 | 4.75e-01 | 74.8% | 100.0% |
| 5dqqA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 42.0 | 4.08e-01 | 75.7% | 76.5% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.58 | 40.0 | 3.43e-01 | 71.3% | 60.1% |
| 3mzvA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 43.0 | 3.22e-01 | 78.3% | 57.6% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 38.0 | 4.41e-01 | 99.1% | 100.0% |
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.57 | 45.0 | 4.04e-01 | 87.0% | 99.4% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 39.0 | 4.26e-01 | 71.3% | 89.6% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 41.0 | 4.21e-01 | 76.5% | 92.0% |
| 5tk8A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 48.0 | 4.08e-01 | 93.9% | 92.1% |
| 1wbeA01 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.56 | 46.0 | 3.90e-01 | 87.0% | 78.4% |
| 3x3bA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 48.0 | 3.76e-01 | 100.0% | 73.1% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.55 | 39.0 | 4.11e-01 | 72.2% | 83.0% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 42.0 | 4.43e-01 | 81.7% | 92.5% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 42.0 | 4.07e-01 | 84.3% | 77.3% |
| 2z1qB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 38.0 | 3.62e-01 | 87.8% | 62.5% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.53 | 41.0 | 3.90e-01 | 85.2% | 83.7% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 39.0 | 4.17e-01 | 80.9% | 99.0% |
| 3c7jA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.51 | 36.0 | 3.38e-01 | 73.0% | 93.8% |
| 3v5uA02 | 1.20.1420.30 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region | 0.51 | 37.0 | 3.01e-01 | 74.8% | 60.2% |
| 4x28C03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 36.0 | 3.37e-01 | 73.0% | 76.2% |
| 1b25A02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.50 | 41.0 | 3.51e-01 | 88.7% | 56.2% |
| 2hpsA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 36.0 | 3.19e-01 | 87.8% | 48.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4147448 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.91 | 68.0 | 7.68e-01 | 76.5% | 100.0% |
| 4425454 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.91 | 68.0 | 7.10e-01 | 76.5% | 85.7% |
| 3944791 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 66.0 | 7.43e-01 | 76.5% | 96.7% |
| 4033548 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.89 | 66.0 | 7.37e-01 | 76.5% | 96.8% |
| 4565984 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.89 | 67.0 | 7.15e-01 | 77.4% | 95.0% |
| 5002943 | 148.1.3.4 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C | 0.89 | 66.0 | 7.43e-01 | 76.5% | 98.9% |
| 3999760 | 148.1.3.24 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_7 | 0.80 | 59.0 | 6.29e-01 | 76.5% | 96.0% |
| 3990110 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.64 | 42.0 | 4.46e-01 | 79.1% | 74.0% |
| 3701178 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.63 | 44.0 | 4.23e-01 | 71.3% | 92.2% |
| 3590231 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.61 | 42.0 | 4.37e-01 | 73.9% | 76.2% |
| 4031440 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.59 | 41.0 | 4.66e-01 | 77.4% | 96.5% |
| 4981781 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 41.0 | 4.39e-01 | 74.8% | 84.0% |
| 4140810 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.58 | 44.0 | 4.62e-01 | 80.0% | 94.3% |
| 3590191 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.58 | 41.0 | 4.05e-01 | 78.3% | 68.0% |
| 3407936 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.57 | 41.0 | 4.02e-01 | 74.8% | 89.6% |
| 4857393 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 40.0 | 3.94e-01 | 77.4% | 69.1% |
| 5007439 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 44.0 | 4.27e-01 | 83.5% | 77.6% |
| 4947863 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 39.0 | 4.32e-01 | 73.0% | 97.8% |
| 5037039 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.55 | 41.0 | 4.03e-01 | 78.3% | 77.6% |
| 4170393 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.55 | 46.0 | 3.30e-01 | 92.2% | 53.7% |
| 4944102 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 38.0 | 4.26e-01 | 73.0% | 98.9% |
| 3933316 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 38.0 | 3.02e-01 | 73.0% | 47.3% |
| 3215453 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.54 | 41.0 | 4.05e-01 | 100.0% | 75.2% |
| 5042605 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.53 | 39.0 | 4.34e-01 | 78.3% | 98.9% |
| 4927466 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.53 | 39.0 | 4.27e-01 | 76.5% | 100.0% |
| 4943136 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 39.0 | 4.28e-01 | 77.4% | 100.0% |
| 3225799 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.52 | 45.0 | 3.87e-01 | 97.4% | 66.3% |
| 3270588 | 528.1.1.1 ↗ | alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH | 0.52 | 43.0 | 3.02e-01 | 90.4% | 79.2% |
| 3592778 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 36.0 | 4.05e-01 | 90.4% | 97.6% |
| 3526937 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 41.0 | 3.92e-01 | 88.7% | 80.7% |
| 4045230 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.51 | 43.0 | 3.11e-01 | 91.3% | 54.8% |
| 3787521 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 40.0 | 3.63e-01 | 87.8% | 60.6% |
| 4969273 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.50 | 38.0 | 4.14e-01 | 97.4% | 94.9% |
| 4025851 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.50 | 40.0 | 3.43e-01 | 87.8% | 52.4% |