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OP053362.1__UYE97297.1__X__00132

Bact-Vir

OP053362.1__UYE97297.1__X__00132

Identity

Accession:
OP053362 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-205
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 38.0 4.43e-01 98.4% 82.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.58 32.0 3.59e-01 96.9% 67.6%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 39.0 3.81e-01 100.0% 62.2%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 39.0 3.67e-01 100.0% 57.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 36.0 3.45e-01 100.0% 58.2%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 32.0 3.94e-01 86.7% 98.7%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 34.0 3.36e-01 100.0% 57.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 31.0 3.51e-01 92.2% 77.7%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 32.0 3.14e-01 91.4% 53.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273105 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 41.0 4.43e-01 100.0% 82.9%
4887870 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 38.0 3.49e-01 100.0% 53.3%
3941378 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.54 28.0 3.18e-01 84.4% 65.3%
D2 high residues 242-332
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.75 60.0 5.83e-01 100.0% 77.8%
3u61D03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.72 54.0 5.43e-01 100.0% 79.1%
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.72 56.0 5.62e-01 100.0% 82.6%
3lcrB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 44.0 3.13e-01 70.3% 74.8%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.65 51.0 5.17e-01 100.0% 87.6%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 50.0 4.94e-01 100.0% 79.4%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.63 51.0 5.19e-01 96.7% 91.0%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 43.0 4.18e-01 91.2% 68.0%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.58 48.0 4.03e-01 100.0% 51.9%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.58 49.0 4.47e-01 100.0% 70.4%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.57 40.0 2.86e-01 71.4% 25.3%
1ow4A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.57 45.0 4.12e-01 98.9% 65.0%
2bpoA02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.55 47.0 4.07e-01 95.6% 69.7%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 36.0 3.86e-01 91.2% 81.1%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.55 47.0 4.63e-01 96.7% 99.0%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.54 47.0 4.10e-01 100.0% 62.2%
2iu5B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.74e-01 96.7% 57.6%
2g3bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.43e-01 87.9% 66.8%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 46.0 3.01e-01 97.8% 50.8%
4hl4A02 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.52 36.0 3.29e-01 74.7% 69.4%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.52 46.0 3.99e-01 100.0% 93.6%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 36.0 3.20e-01 74.7% 94.9%
4ci1B03 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 33.0 3.69e-01 91.2% 89.9%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.50 37.0 3.50e-01 98.9% 64.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031396 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.66 50.0 4.82e-01 98.9% 70.5%
3707908 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 51.0 4.80e-01 100.0% 70.0%
4626667 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.59 53.0 4.79e-01 98.9% 87.1%
1560752 592.4.1.1 alpha arrays › PWI domain-like › Repetitive domains of egg case silk protein TuSp1 › Repetitive domains of egg case silk protein TuSp1 › RP1-2 0.58 49.0 4.47e-01 100.0% 70.4%
3565196 198.1.1.13 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, PF31278 0.56 40.0 4.15e-01 95.6% 80.0%
4118682 601.18.1.22 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › FTR1 0.53 41.0 4.28e-01 96.7% 91.8%
4660264 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.51 37.0 3.77e-01 75.8% 77.8%
D3 high residues 543-757
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g1iA02 3.30.300.170 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.69 25.0 4.27e-01 83.7% 98.6%
3bioA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 23.0 3.17e-01 83.7% 61.4%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 23.0 3.66e-01 83.3% 86.0%
2wkbA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.57 26.0 3.71e-01 83.3% 90.7%
4dcuA03 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 24.0 3.59e-01 83.3% 93.9%
1mkyA03 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 23.0 3.34e-01 83.3% 82.2%
4i1tA02 3.30.70.2640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase 0.56 23.0 3.63e-01 82.8% 97.6%
2v7bA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 23.0 3.26e-01 84.7% 80.4%
3v97A03 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.54 22.0 3.46e-01 94.9% 95.3%
7whfC01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 23.0 3.23e-01 83.3% 82.8%
1zysA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 20.0 2.85e-01 83.3% 72.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003241 102.7.1.1 alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I 0.71 29.0 4.05e-01 94.9% 73.0%
5057969 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.68 26.0 3.92e-01 84.7% 82.2%
3984451 327.13.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH 0.66 24.0 3.92e-01 84.2% 92.0%
3979017 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.66 23.0 3.68e-01 85.1% 84.0%
4985202 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.66 26.0 3.75e-01 85.1% 77.0%
5053188 327.7.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C 0.65 25.0 4.09e-01 85.6% 98.7%
4951957 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.65 25.0 3.71e-01 84.2% 78.9%
4949608 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.64 26.0 3.76e-01 87.0% 79.0%
4027177 327.6.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.64 23.0 3.96e-01 84.2% 98.6%
5047895 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.63 25.0 3.68e-01 85.6% 81.1%
3987655 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.62 24.0 3.60e-01 84.7% 81.1%
4973380 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.62 27.0 3.80e-01 85.6% 81.9%
3388258 327.6.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.62 24.0 3.93e-01 83.7% 100.0%
4980727 327.6.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.62 24.0 3.50e-01 83.7% 77.9%
3214730 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.62 23.0 3.60e-01 83.7% 84.7%
4563228 327.6.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.62 25.0 3.75e-01 83.7% 89.4%
3471137 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.62 24.0 3.55e-01 83.7% 78.9%
5081028 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.61 24.0 3.58e-01 85.6% 82.2%
5011900 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.61 23.0 3.68e-01 83.7% 93.3%
4649212 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.61 24.0 3.56e-01 83.3% 82.2%
5050093 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.61 23.0 3.49e-01 83.3% 81.1%
3539067 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.60 24.0 3.76e-01 83.7% 93.8%
4954525 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.60 23.0 3.50e-01 83.3% 82.2%
5035266 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.60 25.0 3.91e-01 85.1% 98.8%
4176611 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.60 23.0 3.37e-01 83.3% 76.8%
3941228 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.59 23.0 3.41e-01 84.7% 81.1%
3924160 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.59 24.0 3.50e-01 83.3% 84.4%
3835991 327.6.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.59 24.0 3.54e-01 85.1% 84.2%
3885821 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 24.0 3.45e-01 83.3% 82.1%
5033655 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 22.0 3.30e-01 83.7% 80.0%
4379426 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 23.0 3.41e-01 83.3% 83.3%
5073648 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.58 22.0 3.33e-01 83.7% 82.0%
4951601 304.24.1.37 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.57 19.0 3.34e-01 82.8% 92.3%
3288186 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.57 23.0 3.36e-01 83.3% 83.3%
4979881 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.56 22.0 3.11e-01 84.7% 71.4%
2706486 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.51 20.0 3.11e-01 83.7% 93.3%
D4 medium residues 23-77
PDB
D5 medium residues 349-470
PDB
D6 medium residues 492-542
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09684.16 best Tail_P2_I 26.1 1.00e-05 82.3% 24.5%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 41.0 2.71e-01 100.0% 51.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
58403 183.1.1.1 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.56 37.0 3.64e-01 70.6% 91.2%