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OP056089.1__UYD72124.1__X__00024
Bact-VirOP056089.1__UYD72124.1__X__00024
Identity
- Accession:
- OP056089 ↗
- Kingdom:
- phage
Quality
48.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chaseviridae›
Liaoningvirus›
Vibrio_phage_vB_VpaM_VPs20
TaxID: 2978980
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 195-362
D2
high
residues 1063-1134
D3
medium
residues 99-172
D4
medium
residues 653-678_735-802_827-863
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.59 | 43.0 | 3.84e-01 | 74.8% | 71.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2715553 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.61 | 46.0 | 4.77e-01 | 77.1% | 100.0% |
| 5028573 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 42.0 | 4.10e-01 | 74.0% | 93.6% |
| 4937553 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.56 | 40.0 | 4.30e-01 | 74.0% | 97.4% |
| 4634054 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 39.0 | 4.00e-01 | 74.0% | 92.8% |
| 3976034 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 38.0 | 4.08e-01 | 76.3% | 87.0% |
| 4030756 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.51 | 39.0 | 3.35e-01 | 79.4% | 88.6% |
D5
medium
residues 679-734_803-826_864-895
Domain cluster:
representative