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OP056089.1__UYD72126.1__X__00026
Bact-VirOP056089.1__UYD72126.1__X__00026
Identity
- Accession:
- OP056089 ↗
- Kingdom:
- phage
Quality
71.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chaseviridae›
Liaoningvirus›
Vibrio_phage_vB_VpaM_VPs20
TaxID: 2978980
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-36_53-193
Domain cluster:
rep: ON287374.1__URC22647.1__KASHIRA_00530__00053__D34-79_93-188
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 29.0 | 3.92e-01 | 91.1% | 75.0% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 27.0 | 3.54e-01 | 85.8% | 64.5% |
| 2e9wB05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 27.0 | 3.63e-01 | 91.1% | 70.3% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.64 | 35.0 | 3.47e-01 | 98.2% | 50.6% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.63 | 34.0 | 4.31e-01 | 100.0% | 87.9% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.62 | 25.0 | 3.94e-01 | 83.4% | 95.5% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.62 | 25.0 | 3.86e-01 | 82.8% | 95.3% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.61 | 40.0 | 4.23e-01 | 100.0% | 73.0% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 43.0 | 4.69e-01 | 100.0% | 86.9% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 25.0 | 3.41e-01 | 94.7% | 70.8% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 26.0 | 3.30e-01 | 85.8% | 64.1% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.61 | 44.0 | 4.54e-01 | 100.0% | 77.5% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.61 | 25.0 | 3.76e-01 | 82.8% | 91.2% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 28.0 | 3.20e-01 | 90.5% | 57.6% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.61 | 34.0 | 4.11e-01 | 100.0% | 82.3% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 26.0 | 3.49e-01 | 94.7% | 74.2% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 27.0 | 3.85e-01 | 89.3% | 89.7% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.60 | 43.0 | 4.46e-01 | 100.0% | 76.5% |
| 1cg2A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 29.0 | 3.48e-01 | 90.5% | 69.1% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 26.0 | 3.20e-01 | 87.0% | 63.4% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 24.0 | 3.33e-01 | 89.3% | 75.9% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.58 | 27.0 | 3.84e-01 | 82.8% | 96.0% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 29.0 | 3.53e-01 | 94.1% | 72.3% |
| 5uejA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 28.0 | 3.42e-01 | 81.7% | 71.1% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 26.0 | 3.14e-01 | 91.1% | 64.0% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 29.0 | 3.44e-01 | 94.1% | 69.8% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 29.0 | 3.52e-01 | 94.1% | 75.9% |
| 2fb0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 22.0 | 2.93e-01 | 81.7% | 63.8% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.54 | 30.0 | 3.21e-01 | 86.4% | 60.4% |
| 3d85D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 25.0 | 3.04e-01 | 91.7% | 64.2% |
| 3ct9A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 27.0 | 3.36e-01 | 80.5% | 76.6% |
| 2d5wA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.53 | 32.0 | 3.79e-01 | 100.0% | 87.2% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 27.0 | 3.53e-01 | 100.0% | 89.2% |
| 3hp7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 29.0 | 2.73e-01 | 91.7% | 42.4% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 34.0 | 3.60e-01 | 100.0% | 77.6% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 28.0 | 3.20e-01 | 80.5% | 71.9% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957562 | 1.1.13.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 | 0.85 | 52.0 | 6.41e-01 | 100.0% | 93.6% |
| 3974464 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 36.0 | 5.58e-01 | 86.4% | 94.7% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.82 | 51.0 | 6.32e-01 | 100.0% | 95.5% |
| 3823591 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 31.0 | 4.03e-01 | 91.7% | 67.0% |
| 4988102 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.73 | 44.0 | 5.53e-01 | 100.0% | 94.5% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.72 | 47.0 | 5.61e-01 | 100.0% | 95.7% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.70 | 43.0 | 5.20e-01 | 100.0% | 92.7% |
| 4952429 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 40.0 | 5.03e-01 | 100.0% | 93.0% |
| 3394912 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 27.0 | 3.73e-01 | 91.1% | 69.4% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.68 | 42.0 | 4.83e-01 | 100.0% | 82.7% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 42.0 | 5.23e-01 | 98.8% | 100.0% |
| 2575510 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 26.0 | 3.48e-01 | 85.8% | 63.8% |
| 3943681 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.67 | 54.0 | 5.79e-01 | 100.0% | 94.0% |
| 5011413 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.67 | 26.0 | 3.47e-01 | 88.2% | 64.4% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.67 | 42.0 | 3.54e-01 | 100.0% | 39.6% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 53.0 | 5.82e-01 | 94.7% | 97.1% |
| 3218711 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.67 | 29.0 | 3.60e-01 | 91.7% | 63.8% |
| 4234397 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 25.0 | 3.23e-01 | 83.4% | 57.0% |
| 3386856 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.67 | 28.0 | 3.79e-01 | 90.5% | 74.1% |
| 3551257 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.66 | 25.0 | 3.22e-01 | 83.4% | 57.0% |
| 2771056 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.66 | 25.0 | 3.36e-01 | 87.0% | 62.5% |
| 5025196 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.65 | 25.0 | 3.55e-01 | 95.9% | 72.5% |
| 3731186 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.63 | 28.0 | 4.15e-01 | 82.8% | 98.6% |
| 3687652 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.62 | 27.0 | 4.01e-01 | 82.8% | 95.7% |
| 4956118 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.62 | 26.0 | 3.54e-01 | 95.9% | 74.1% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.61 | 43.0 | 4.97e-01 | 99.4% | 97.6% |
| 4085092 | 304.12.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C | 0.61 | 27.0 | 3.51e-01 | 91.1% | 71.3% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.61 | 38.0 | 4.19e-01 | 100.0% | 75.7% |
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.61 | 42.0 | 4.69e-01 | 100.0% | 90.8% |
| 3501491 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 34.0 | 3.73e-01 | 100.0% | 67.4% |
| 3512169 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 27.0 | 3.55e-01 | 97.0% | 77.8% |
| 3586761 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 27.0 | 2.23e-01 | 96.4% | 23.7% |
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.59 | 40.0 | 4.60e-01 | 100.0% | 92.8% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.59 | 42.0 | 3.56e-01 | 100.0% | 45.9% |
| 4935602 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.59 | 30.0 | 3.50e-01 | 82.8% | 68.3% |
| 4257110 | 256.1.1.11 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF2536 | 0.58 | 22.0 | 3.61e-01 | 84.6% | 96.7% |
| 5000076 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 30.0 | 3.55e-01 | 94.7% | 72.2% |
| 4964282 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 28.0 | 3.29e-01 | 82.2% | 65.6% |
| 4984209 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 28.0 | 3.29e-01 | 81.7% | 66.7% |
| 2126271 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 28.0 | 3.33e-01 | 94.7% | 67.8% |
| 4923979 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.56 | 32.0 | 3.10e-01 | 89.3% | 48.7% |
| 2391814 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.56 | 39.0 | 3.95e-01 | 100.0% | 71.1% |
| 4255072 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.56 | 37.0 | 3.53e-01 | 89.9% | 56.4% |
| 3465961 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.56 | 36.0 | 3.36e-01 | 89.9% | 50.5% |
| 4999156 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 29.0 | 3.47e-01 | 95.3% | 73.0% |
| 4971865 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 28.0 | 3.29e-01 | 82.2% | 68.3% |
| 3595076 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.55 | 32.0 | 2.75e-01 | 89.3% | 35.2% |
| 5047753 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 29.0 | 3.45e-01 | 94.1% | 73.9% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.55 | 31.0 | 2.98e-01 | 89.9% | 47.2% |
| 4969658 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 28.0 | 3.37e-01 | 94.1% | 72.2% |
| 3602459 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 28.0 | 3.36e-01 | 94.7% | 72.2% |
| 3510207 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.54 | 28.0 | 2.77e-01 | 100.0% | 42.6% |
| 4008941 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.54 | 27.0 | 3.06e-01 | 81.1% | 62.3% |
| 4055405 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.52 | 27.0 | 3.14e-01 | 81.1% | 68.0% |
| 3596254 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.50 | 27.0 | 3.12e-01 | 80.5% | 69.6% |
| 3678951 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.50 | 37.0 | 3.35e-01 | 89.9% | 55.3% |
| 3960516 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.50 | 33.0 | 3.24e-01 | 89.9% | 58.9% |
D2
high
residues 265-366
Domain cluster:
rep: MH191398.1__AWN08649.1__X__00066__D22-121