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OP067662.1__UUR56238.1__X__00005

Bact-Vir

OP067662.1__UUR56238.1__X__00005

Identity

Accession:
OP067662 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tsukubavirus› Xanthomonas_phage_pXoo2107

TaxID: 2970323

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-130
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00095__D19-115
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 47.0 3.20e-01 70.3% 46.3%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 53.0 4.37e-01 89.1% 64.3%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 43.0 3.14e-01 70.3% 95.6%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 43.0 3.86e-01 72.3% 77.0%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.61 48.0 3.72e-01 86.1% 49.4%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.61 49.0 4.01e-01 88.1% 80.6%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.60 49.0 4.20e-01 91.1% 59.1%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 45.0 2.97e-01 81.2% 51.7%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 39.0 3.39e-01 80.2% 43.9%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 44.0 3.98e-01 79.2% 79.6%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 49.0 3.72e-01 88.1% 62.7%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 44.0 3.90e-01 82.2% 76.1%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 41.0 2.96e-01 73.3% 33.1%
1a5yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 40.0 2.93e-01 74.3% 31.3%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 40.0 2.96e-01 74.3% 31.7%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.56 40.0 3.61e-01 75.2% 100.0%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 49.0 4.29e-01 99.0% 81.7%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 37.0 4.00e-01 71.3% 84.3%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 39.0 2.85e-01 74.3% 30.4%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 44.0 3.16e-01 89.1% 57.5%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 41.0 2.85e-01 82.2% 78.1%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.53 41.0 3.59e-01 84.2% 78.3%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 39.0 2.85e-01 77.2% 30.0%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.93e-01 79.2% 55.9%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 40.0 2.83e-01 84.2% 47.9%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 38.0 2.79e-01 77.2% 31.4%
3b7kC02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 36.0 3.51e-01 71.3% 78.2%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 36.0 2.50e-01 74.3% 78.3%
1t3qB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 43.0 3.51e-01 95.0% 85.1%
1dgjA07 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 42.0 3.46e-01 96.0% 88.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3169840 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.69 58.0 4.59e-01 89.1% 75.0%
3829563 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.69 57.0 4.85e-01 89.1% 61.2%
3789395 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.65 45.0 3.11e-01 71.3% 54.6%
3958869 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 44.0 3.41e-01 70.3% 37.2%
3727346 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.62 45.0 3.10e-01 76.2% 56.9%
3761536 11.1.1.1209 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131L_2nd, Ig_TMEM131L_3 0.61 43.0 3.18e-01 73.3% 48.4%
3927891 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 44.0 4.03e-01 74.3% 86.9%
4965849 3435.1.1.9 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 0.61 43.0 3.21e-01 84.2% 29.0%
3255413 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.60 43.0 3.51e-01 74.3% 88.2%
3883680 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.60 47.0 3.08e-01 85.1% 50.4%
3931298 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 45.0 4.27e-01 81.2% 76.8%
3765955 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.59 47.0 3.07e-01 85.1% 45.9%
3236951 243.3.1.35 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.59 41.0 3.52e-01 71.3% 64.4%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.59 41.0 3.04e-01 72.3% 28.0%
1679989 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.59 45.0 3.32e-01 82.2% 35.5%
4029340 5.1.4.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.58 45.0 3.03e-01 82.2% 94.3%
3303897 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 47.0 3.87e-01 88.1% 59.5%
3915618 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 2.68e-01 81.2% 35.1%
3224107 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.91e-01 81.2% 43.3%
3852789 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.56 46.0 2.78e-01 90.1% 57.1%
3238384 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 39.0 3.20e-01 74.3% 45.6%
3627111 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.76e-01 81.2% 89.4%
3855356 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 39.0 2.78e-01 74.3% 26.8%
3293131 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.54 40.0 3.06e-01 77.2% 46.5%
3393936 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.54 38.0 2.67e-01 73.3% 41.9%
3938060 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 38.0 3.21e-01 73.3% 48.0%
4991720 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.54 38.0 3.61e-01 74.3% 63.2%
5037531 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 37.0 2.30e-01 71.3% 21.6%
3648728 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 43.0 3.10e-01 91.1% 80.8%
3580087 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.81e-01 88.1% 79.4%
3763650 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.53 41.0 2.93e-01 85.1% 85.1%
4667155 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.53 41.0 3.77e-01 84.2% 69.6%
3445792 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 43.0 2.98e-01 90.1% 75.3%
3510862 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.53 40.0 2.82e-01 83.2% 83.5%
2082647 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 37.0 2.83e-01 72.3% 84.6%
3663778 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 43.0 3.08e-01 91.1% 82.7%
3917795 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.52 42.0 2.95e-01 89.1% 90.7%
4035992 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.51 39.0 3.01e-01 82.2% 82.8%
5044412 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 39.0 3.06e-01 86.1% 78.4%
3807410 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.50 43.0 3.36e-01 98.0% 96.7%
D2 medium residues 151-184
PDB