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OP068333.1__UVG34162.1__SEA_PAVLO_106__00106

Bact-Vir

OP068333.1__UVG34162.1__SEA_PAVLO_106__00106

Identity

Accession:
OP068333 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-63
PDB
D2 high residues 74-122
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.73 56.0 5.70e-01 93.9% 87.2%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.72 52.0 5.14e-01 77.6% 96.1%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.71 61.0 5.48e-01 100.0% 73.2%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 50.0 4.59e-01 95.9% 58.7%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.69 56.0 5.32e-01 87.8% 98.2%
2db5A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.68 49.0 3.75e-01 81.6% 52.3%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 51.0 4.13e-01 89.8% 54.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 53.0 4.06e-01 100.0% 95.0%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.62 46.0 4.15e-01 91.8% 56.8%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.19e-01 100.0% 85.6%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 39.0 4.11e-01 77.6% 82.1%
4iw9B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 46.0 3.74e-01 87.8% 88.2%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 41.0 4.41e-01 87.8% 87.2%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 51.0 4.73e-01 100.0% 98.4%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 40.0 2.38e-01 75.5% 32.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.59 49.0 3.71e-01 100.0% 60.9%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 48.0 2.98e-01 91.8% 30.3%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.57e-01 100.0% 95.2%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 44.0 2.76e-01 91.8% 24.9%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.57 44.0 2.90e-01 89.8% 32.5%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 45.0 3.06e-01 98.0% 37.6%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.93e-01 100.0% 82.6%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.63e-01 100.0% 98.3%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 40.0 3.42e-01 79.6% 61.2%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 47.0 3.54e-01 100.0% 95.5%
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 44.0 3.08e-01 93.9% 42.2%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 44.0 3.51e-01 91.8% 70.6%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.69e-01 89.8% 77.8%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.25e-01 100.0% 90.1%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.42e-01 100.0% 80.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 46.0 4.41e-01 100.0% 98.3%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.24e-01 87.8% 93.6%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.28e-01 100.0% 94.3%
4f87B00 3.30.720.190 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 36.0 3.49e-01 79.6% 91.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.90e-01 98.0% 84.5%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 41.0 2.76e-01 91.8% 56.8%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 36.0 2.91e-01 83.7% 43.2%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.50 39.0 2.47e-01 91.8% 93.4%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.50 40.0 3.47e-01 100.0% 54.5%
4qclA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.23e-01 87.8% 90.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3472289 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.80 54.0 6.16e-01 91.8% 100.0%
3706916 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 54.0 3.72e-01 71.4% 58.7%
3415739 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.76 52.0 5.87e-01 77.6% 100.0%
3404585 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 51.0 5.15e-01 85.7% 74.0%
3593875 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 50.0 4.88e-01 75.5% 72.7%
3349740 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 48.0 4.95e-01 71.4% 97.8%
3935170 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.70 49.0 5.04e-01 73.5% 86.7%
3702861 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.69 51.0 4.90e-01 77.6% 72.7%
3620138 3246.1.1.4 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.69 47.0 3.73e-01 71.4% 49.0%
3253246 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.69 42.0 4.88e-01 71.4% 100.0%
5005974 304.51.1.6 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.69 58.0 3.80e-01 100.0% 49.4%
2491145 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.69 57.0 3.33e-01 100.0% 12.3%
3167972 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 57.0 3.12e-01 100.0% 7.1%
3272228 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 50.0 3.12e-01 81.6% 27.4%
3396514 386.1.1.259 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.66 50.0 5.16e-01 87.8% 88.9%
3229204 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 48.0 4.70e-01 85.7% 70.9%
3489460 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.65 44.0 4.94e-01 89.8% 97.1%
4028185 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.65 45.0 4.56e-01 73.5% 78.0%
3739551 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 47.0 5.01e-01 91.8% 97.5%
3737176 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 51.0 4.37e-01 91.8% 74.1%
3709555 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 50.0 4.89e-01 91.8% 78.2%
4960549 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 45.0 4.54e-01 73.5% 80.0%
4211411 386.1.1.231 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF2709 0.64 49.0 4.00e-01 87.8% 44.1%
3487736 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 45.0 3.06e-01 75.5% 80.6%
3935682 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 45.0 4.28e-01 93.9% 63.3%
3512320 386.1.1.18 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.62 43.0 4.27e-01 85.7% 69.1%
5039125 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.62 43.0 3.95e-01 71.4% 61.5%
4945288 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.78e-01 100.0% 100.0%
1271326 220.1.1.54 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 0.62 50.0 3.81e-01 100.0% 63.5%
4935165 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 53.0 3.52e-01 100.0% 96.7%
3433500 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 48.0 4.82e-01 87.8% 90.0%
3499437 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 46.0 2.96e-01 85.7% 18.0%
4889754 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 43.0 4.07e-01 77.6% 61.7%
3268906 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 41.0 3.45e-01 71.4% 74.2%
5079258 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.60 46.0 4.71e-01 85.7% 97.8%
3353038 10.1.1.3 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin 0.60 41.0 2.61e-01 73.5% 75.6%
3184613 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 43.0 3.15e-01 83.7% 78.7%
3646521 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.60 52.0 4.58e-01 100.0% 82.7%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.59 51.0 4.73e-01 100.0% 92.3%
3233815 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 49.0 3.21e-01 100.0% 24.4%
3706282 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 47.0 3.68e-01 93.9% 87.5%
4990102 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 49.0 5.08e-01 91.8% 100.0%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.58 45.0 3.57e-01 91.8% 82.5%
4945596 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.58 44.0 4.48e-01 87.8% 100.0%
4379527 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.58 49.0 4.11e-01 95.9% 95.3%
3211833 4351.1.1.1 alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.58 45.0 2.97e-01 87.8% 21.3%
4406214 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.58 48.0 3.95e-01 95.9% 87.1%
3604590 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.57 43.0 2.82e-01 85.7% 94.0%
3901340 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 44.0 4.28e-01 89.8% 80.0%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.57 48.0 3.37e-01 100.0% 50.9%
3246854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 44.0 4.11e-01 89.8% 78.5%
3416458 386.1.1.259 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.56 43.0 4.37e-01 95.9% 97.8%
3795823 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.56 45.0 3.00e-01 100.0% 42.0%
3415237 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.13e-01 100.0% 38.6%
4386701 310.2.1.35 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 0.55 42.0 3.18e-01 91.8% 72.4%
4937515 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 43.0 3.62e-01 91.8% 50.0%
4366176 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.54 44.0 3.54e-01 100.0% 95.5%
3597248 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.73e-01 100.0% 97.9%
4990121 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.53 39.0 3.30e-01 91.8% 81.0%
4243248 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.51 40.0 2.65e-01 95.9% 65.1%
3218510 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.51 39.0 3.33e-01 95.9% 53.1%