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OP068335.1__UVG34224.1__SEA_HANNABELLA_17__00017

Bact-Vir

OP068335.1__UVG34224.1__SEA_HANNABELLA_17__00017

Identity

Accession:
OP068335 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burrovirus› Microbacterium_phage_Hannabella

TaxID: 2972510

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78_99-129
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.72 25.0 3.92e-01 81.3% 84.2%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.68 29.0 3.45e-01 97.2% 55.8%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 30.0 3.25e-01 90.7% 47.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 32.0 4.12e-01 100.0% 81.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.67 31.0 3.19e-01 90.7% 44.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 27.0 3.33e-01 86.0% 57.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 30.0 3.28e-01 89.7% 50.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 27.0 3.36e-01 86.9% 59.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 32.0 3.90e-01 96.3% 73.1%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 28.0 3.54e-01 97.2% 66.2%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 29.0 2.14e-01 97.2% 15.5%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 26.0 1.87e-01 97.2% 13.9%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.62 30.0 3.11e-01 73.8% 47.5%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 28.0 3.15e-01 89.7% 51.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.60 28.0 3.34e-01 91.6% 63.4%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 28.0 3.53e-01 86.9% 75.4%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.58 28.0 3.19e-01 89.7% 57.5%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 25.0 1.76e-01 97.2% 11.9%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 26.0 3.16e-01 95.3% 68.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236929 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 29.0 2.31e-01 80.4% 20.0%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 27.0 3.62e-01 86.0% 65.5%
3238035 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 32.0 4.55e-01 88.8% 94.0%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.70 28.0 3.90e-01 83.2% 76.0%
4945655 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 30.0 3.10e-01 89.7% 45.0%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.65 31.0 3.09e-01 90.7% 41.8%
3589473 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 30.0 3.44e-01 87.9% 57.5%
4426276 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 28.0 3.37e-01 82.2% 60.0%
4107506 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 30.0 3.68e-01 100.0% 70.8%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 31.0 3.55e-01 100.0% 64.0%
3164555 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 29.0 2.64e-01 93.5% 30.7%
4018977 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 30.0 2.86e-01 88.8% 38.4%
4183857 325.1.7.30 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 0.60 30.0 3.46e-01 100.0% 64.0%
4305633 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.60 36.0 4.06e-01 100.0% 78.8%
3392311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 29.0 2.52e-01 88.8% 29.7%
3908855 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 26.0 3.40e-01 100.0% 74.5%
4068978 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 29.0 3.33e-01 100.0% 61.3%
4277745 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.59 36.0 4.07e-01 100.0% 81.2%
3704328 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 27.0 3.01e-01 86.9% 53.0%
3383138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 32.0 3.65e-01 100.0% 71.8%
4018116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 29.0 2.80e-01 94.4% 41.5%
3954708 4325.1.1.9 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.57 28.0 3.61e-01 91.6% 94.0%
5053926 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 29.0 3.26e-01 91.6% 63.7%
3592085 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.56 38.0 2.85e-01 70.1% 70.8%
3624447 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 29.0 2.97e-01 91.6% 48.2%
4927362 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.55 25.0 3.45e-01 86.0% 95.6%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 29.0 3.55e-01 100.0% 81.5%
4654713 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.55 26.0 2.41e-01 87.9% 31.0%
5039314 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 38.0 3.37e-01 72.9% 100.0%