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OP068343.1__UVG35179.1__SEA_CECE_170__00128

Bact-Vir

OP068343.1__UVG35179.1__SEA_CECE_170__00128

Identity

Accession:
OP068343 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Cece

TaxID: 2972516

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-142
PDB
Domain cluster: rep: LR990834.1__CAD7757509.1__ATHO_20__00020__D167-317
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01551.30 best Peptidase_M23 60.4 2.20e-16 78.0% 92.7%
D2 high residues 494-669
PDB
Domain cluster: rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 60.3 3.40e-16 74.4% 97.7%
D3 medium residues 148-221
PDB
Domain cluster: rep: OP068343.1__UVG35179.1__SEA_CECE_170__00128__D328-391
D4 medium residues 231-304
PDB
Domain cluster: rep: OP068343.1__UVG35179.1__SEA_CECE_170__00128__D328-391
D5 medium residues 328-391
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.95 72.0 7.48e-01 81.2% 84.7%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 4.43e-01 76.6% 71.0%
1kl9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 4.08e-01 81.2% 60.0%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.27e-01 73.4% 73.8%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.28e-01 71.9% 79.2%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 39.0 4.15e-01 71.9% 77.8%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.02e-01 73.4% 71.2%
3k6oA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.59 39.0 3.79e-01 76.6% 60.3%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.40e-01 82.8% 65.8%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.96e-01 75.0% 72.3%
3o58B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.99e-01 96.9% 69.3%
1cjaA01 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.54 46.0 3.59e-01 98.4% 63.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 46.0 4.57e-01 98.4% 98.5%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.43e-01 89.1% 70.5%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.52 36.0 2.87e-01 73.4% 55.3%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.51 35.0 2.66e-01 71.9% 95.1%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 4.11e-01 96.9% 87.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013287 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.97 74.0 7.72e-01 82.8% 85.0%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 76.0 7.17e-01 90.6% 78.7%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 47.0 5.00e-01 76.6% 81.8%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 46.0 4.25e-01 85.9% 58.7%
3797361 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 3.44e-01 71.9% 59.2%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 45.0 4.59e-01 89.1% 88.3%
152070 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.59 43.0 4.11e-01 78.1% 77.3%
4265586 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 45.0 3.76e-01 90.6% 91.2%
4161829 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 37.0 3.51e-01 76.6% 56.0%
4957484 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 3.31e-01 70.3% 60.0%
3403109 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.36e-01 73.4% 88.6%
3912151 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 47.0 4.67e-01 96.9% 88.2%
3556735 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 47.0 4.53e-01 95.3% 83.6%
3774381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.77e-01 73.4% 75.7%
3899844 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.63e-01 87.5% 51.3%
5048038 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 3.69e-01 75.0% 71.7%
1094905 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 46.0 4.49e-01 96.9% 92.9%
4343591 2.1.1.11 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.53 36.0 3.22e-01 76.6% 45.7%
3888605 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 41.0 4.02e-01 98.4% 82.4%
3917584 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 41.0 4.05e-01 95.3% 85.7%
D6 medium residues 407-479
PDB
Domain cluster: rep: OP068343.1__UVG35179.1__SEA_CECE_170__00128__D328-391