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OP068343.1__UVG35320.1__SEA_CECE_314__00269

Bact-Vir

OP068343.1__UVG35320.1__SEA_CECE_314__00269

Identity

Accession:
OP068343 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Cece

TaxID: 2972516

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-135
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00119__D20-104
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 46.0 5.63e-01 100.0% 100.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 44.0 5.00e-01 100.0% 81.4%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.41e-01 100.0% 96.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 4.90e-01 100.0% 79.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 4.82e-01 100.0% 77.8%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 3.85e-01 100.0% 39.8%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.71 40.0 4.59e-01 100.0% 77.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 42.0 4.59e-01 100.0% 72.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 41.0 4.47e-01 100.0% 69.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 41.0 4.47e-01 100.0% 69.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 5.04e-01 100.0% 98.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 38.0 4.20e-01 100.0% 77.4%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.36e-01 100.0% 62.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 3.97e-01 100.0% 63.9%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.17e-01 86.3% 80.9%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.59 40.0 3.58e-01 100.0% 50.0%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.59 40.0 3.03e-01 100.0% 29.3%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.42e-01 80.0% 69.1%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 3.76e-01 86.3% 97.4%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.29e-01 80.0% 72.3%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.09e-01 100.0% 79.2%
4kc3A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 50.0 4.24e-01 98.8% 97.8%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 42.0 3.30e-01 77.5% 67.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.86e-01 98.8% 84.7%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 3.84e-01 100.0% 78.8%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.69e-01 86.3% 79.4%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.68e-01 86.3% 79.9%
2v1oB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.18e-01 73.8% 57.4%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 47.0 4.24e-01 100.0% 100.0%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.62e-01 85.0% 86.5%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.29e-01 100.0% 87.0%
1nu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.49e-01 85.0% 71.0%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 3.77e-01 93.8% 76.1%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.61e-01 80.0% 79.8%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 41.0 4.35e-01 100.0% 100.0%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.86e-01 100.0% 64.8%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 45.0 3.72e-01 100.0% 88.4%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.16e-01 100.0% 90.0%
1cjcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.28e-01 100.0% 89.6%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 37.0 2.56e-01 76.2% 99.4%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 45.0 3.89e-01 100.0% 90.2%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.60e-01 85.0% 90.7%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.57e-01 86.3% 82.9%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 4.18e-01 100.0% 89.3%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.16e-01 80.0% 90.8%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.50 36.0 3.55e-01 78.8% 93.4%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.50 35.0 2.48e-01 76.2% 95.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.79 47.0 5.58e-01 100.0% 87.3%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 47.0 4.89e-01 100.0% 65.3%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 46.0 4.56e-01 100.0% 56.5%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.78 47.0 4.89e-01 100.0% 65.3%
3329059 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 46.0 5.65e-01 100.0% 96.0%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 47.0 4.83e-01 100.0% 65.3%
1527468 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.76 48.0 4.28e-01 100.0% 46.8%
3421158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 45.0 5.08e-01 100.0% 80.0%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 47.0 3.40e-01 100.0% 24.3%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 44.0 4.44e-01 100.0% 58.7%
2127246 4.8.1.4 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.74 47.0 4.99e-01 100.0% 73.9%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 43.0 3.84e-01 100.0% 40.9%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 43.0 4.16e-01 100.0% 52.2%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.72 46.0 4.58e-01 100.0% 63.0%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 44.0 4.61e-01 100.0% 66.7%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.71 48.0 5.31e-01 100.0% 86.2%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.33e-01 100.0% 86.2%
3393347 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 43.0 4.15e-01 100.0% 53.3%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.97e-01 100.0% 83.3%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 50.0 4.75e-01 100.0% 62.1%
3627842 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 43.0 4.12e-01 100.0% 53.3%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 4.60e-01 100.0% 57.1%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.70 47.0 4.96e-01 100.0% 78.6%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.18e-01 100.0% 59.8%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 44.0 4.40e-01 100.0% 68.8%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 42.0 4.14e-01 100.0% 62.4%
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.94e-01 100.0% 92.2%
3394789 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 3.93e-01 100.0% 52.7%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 47.0 4.84e-01 100.0% 86.7%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.61 46.0 4.32e-01 100.0% 66.3%
3740204 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.61 40.0 3.95e-01 100.0% 62.4%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.61 39.0 4.08e-01 100.0% 70.7%
5063750 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 45.0 3.39e-01 80.0% 78.1%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 3.84e-01 100.0% 57.9%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.44e-01 100.0% 81.3%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.33e-01 100.0% 75.3%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.58 40.0 3.84e-01 100.0% 60.0%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 3.88e-01 100.0% 69.3%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.58 40.0 4.09e-01 100.0% 73.8%
5002369 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 44.0 4.04e-01 86.3% 90.4%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 48.0 4.48e-01 100.0% 72.0%
4105189 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 44.0 4.12e-01 80.0% 82.1%
4137973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.57 43.0 3.85e-01 80.0% 77.3%
3404671 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.56 49.0 4.14e-01 100.0% 90.6%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.17e-01 100.0% 73.3%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.56 40.0 4.01e-01 100.0% 75.0%
5080017 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 49.0 3.96e-01 100.0% 52.5%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.56 44.0 4.29e-01 100.0% 76.7%
4409502 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 41.0 3.73e-01 80.0% 79.1%
4927707 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 43.0 3.65e-01 86.3% 88.6%
4118973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 41.0 3.61e-01 80.0% 74.2%
3616598 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.55 42.0 4.05e-01 96.2% 71.6%
3284889 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.54 44.0 3.81e-01 86.3% 84.2%
2541236 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.53 44.0 4.13e-01 100.0% 75.0%
160388 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.53 39.0 3.42e-01 80.0% 71.0%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.53 47.0 4.45e-01 100.0% 85.3%
3229184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.41e-01 100.0% 89.4%
4955602 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 44.0 3.53e-01 100.0% 84.7%
3213392 389.1.2.19 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › DUF281 0.51 44.0 4.15e-01 95.0% 90.5%
3738689 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.51 41.0 4.09e-01 88.7% 87.1%
3587514 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.51 40.0 3.44e-01 86.3% 82.3%
3430247 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.51 41.0 3.82e-01 90.0% 72.1%
5081143 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.50 43.0 3.53e-01 100.0% 86.3%
4199183 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 43.0 3.54e-01 95.0% 53.8%
4153457 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.50 46.0 3.81e-01 100.0% 86.7%