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OP068343.1UVG35341.1SEA_CECE_335__00290

Bact-Vir

OP068343.1__UVG35341.1__SEA_CECE_335__00290

Identity

Accession:: OP068343 ↗
Kingdom:: phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Cece

TaxID: 2972516

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-52

PDB

Domain cluster: representative

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2zxqA06	1.20.1270.70	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle	0.73	59.0	5.41e-01	97.9%	84.8%
4kjmA02	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.70	57.0	5.56e-01	100.0%	85.5%
5grqA00	1.10.8.810	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain	0.70	58.0	4.83e-01	100.0%	70.0%
3ihmA03	6.10.250.650	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.69	59.0	5.88e-01	97.9%	100.0%
2oznB01	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.69	58.0	5.00e-01	100.0%	85.0%
2hydA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.68	57.0	3.49e-01	100.0%	70.9%
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.67	45.0	3.89e-01	70.2%	70.1%
3ilkA02	1.10.8.590	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.67	58.0	5.17e-01	100.0%	77.9%
2gsvA00	6.10.140.40	Special › Helix non-globular › Helix Hairpins ›	0.66	44.0	4.00e-01	70.2%	53.7%
5hayA02	1.25.40.440	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain	0.64	43.0	3.62e-01	72.3%	41.8%
2odvA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	42.0	3.26e-01	70.2%	42.9%
1vquA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.62	41.0	3.76e-01	70.2%	49.3%
3akjA02	1.10.1070.20	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 ›	0.60	46.0	3.16e-01	93.6%	23.9%
3c1dA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	39.0	4.00e-01	78.7%	71.7%
7jv7B01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.58	47.0	3.50e-01	100.0%	51.4%
2lpnA00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.58	45.0	3.74e-01	100.0%	91.4%
1bmtA02	3.40.50.280	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain	0.58	46.0	3.30e-01	93.6%	40.5%
3e3vA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	39.0	3.83e-01	70.2%	71.7%
4efcA03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.55	41.0	3.97e-01	100.0%	72.1%
4b8cJ01	3.80.10.10	Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor	0.54	43.0	2.99e-01	100.0%	90.5%
2o3bB00	3.40.1460.10	Alpha Beta › 3-Layer(aba) Sandwich › Nuia › Nuclease A inhibitor-like	0.54	46.0	3.38e-01	97.9%	54.8%
3keyA02	3.30.1370.230	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain	0.53	38.0	3.13e-01	80.9%	40.9%
2px7A00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.53	45.0	3.01e-01	97.9%	59.1%
3smtA02	3.90.1420.10	Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain	0.53	42.0	3.00e-01	97.9%	28.0%
3g2eB00	3.40.920.10	Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III	0.50	39.0	2.82e-01	100.0%	71.4%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.79	68.0	4.87e-01	100.0%	38.0%
3341256	109.3.1.137 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF3490	0.73	61.0	5.72e-01	100.0%	80.0%
3373491	148.1.3.205 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540	0.71	61.0	5.76e-01	100.0%	80.0%
3809136	4133.1.1.0 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like	0.70	46.0	4.24e-01	70.2%	53.8%
4975820	4133.1.1.0 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like	0.69	47.0	4.35e-01	70.2%	58.3%
3719996	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	46.0	3.62e-01	72.3%	33.3%
3180841	101.1.2.198 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH	0.68	46.0	3.23e-01	70.2%	87.1%
5061410	4133.1.1.0 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like	0.67	45.0	3.97e-01	70.2%	47.1%
4517001	632.3.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain	0.66	51.0	5.13e-01	97.9%	96.0%
4453815	192.12.1.1 ↗	alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › Prok-TraM	0.65	43.0	3.54e-01	70.2%	35.8%
3182596	587.1.1.0 ↗	alpha arrays › Nuclear receptor coactivator CBP/p300 ibid domain › Nuclear receptor coactivator CBP/p300 ibid domain › Nuclear receptor coactivator CBP/p300 ibid domain	0.60	43.0	4.40e-01	80.9%	97.5%
3738259	592.2.1.0 ↗	alpha arrays › PWI domain-like › YugE-like › YugE-like	0.60	44.0	4.10e-01	83.0%	66.2%
3349724	397.7.1.0 ↗	few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1	0.59	39.0	4.30e-01	72.3%	88.6%
3588478	103.17.1.0 ↗	alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain	0.58	45.0	4.52e-01	100.0%	83.3%
4938496	103.17.1.0 ↗	alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain	0.58	45.0	4.28e-01	100.0%	72.7%
4184330	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.57	45.0	3.64e-01	91.5%	99.0%
3319844	632.3.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Suv3_C_1	0.57	45.0	4.46e-01	95.7%	84.0%
3223457	101.1.2.661 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD	0.57	46.0	2.90e-01	93.6%	92.9%
3935467	377.1.1.2 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14	0.56	38.0	3.00e-01	70.2%	32.1%
3725349	632.3.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Suv3_C_1	0.55	41.0	4.12e-01	95.7%	86.0%
4944362	7579.1.1.0 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases	0.53	42.0	2.74e-01	97.9%	22.4%
3500243	1008.1.1.74 ↗	alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CC_Cfap43	0.53	38.0	2.87e-01	83.0%	30.0%
3497745	309.1.1.11 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4	0.52	41.0	2.67e-01	100.0%	58.6%

D2 high residues 68-189

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19474.5 best	DUF6011	42.7	4.40e-11	27.9%	81.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dmoA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.58	31.0	3.90e-01	86.9%	91.2%
1z24A00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.54	38.0	3.39e-01	74.6%	85.7%
6gbuD00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	29.0	3.77e-01	82.8%	100.0%
1epaA00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.52	40.0	3.67e-01	81.1%	98.8%
1lf7A00	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.52	40.0	3.65e-01	82.0%	91.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3636596	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	24.0	3.40e-01	71.3%	90.0%
4139943	9.1.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin	0.56	42.0	3.91e-01	79.5%	99.4%
4930594	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.52	24.0	3.00e-01	73.8%	69.3%
3745663	9.1.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin	0.50	38.0	3.43e-01	80.3%	91.3%
3230771	4184.1.1.2 ↗	beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b	0.50	30.0	3.39e-01	94.3%	78.9%