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OP068344.1__UVG35359.1__SEA_ZAGIE_6__00006

Bact-Vir

OP068344.1__UVG35359.1__SEA_ZAGIE_6__00006

Identity

Accession:
OP068344 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Squashvirus› Microbacterium_phage_Zagie

TaxID: 2972517

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-78
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 59.0 3.77e-01 100.0% 16.2%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.72 52.0 3.19e-01 100.0% 12.9%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 51.0 4.07e-01 93.6% 65.7%
1uvgA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 45.0 4.20e-01 100.0% 60.3%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 44.0 3.51e-01 76.6% 42.5%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.62 47.0 4.72e-01 100.0% 85.1%
1tbrR01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 42.0 4.16e-01 100.0% 68.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 42.0 3.47e-01 76.6% 87.5%
5daeA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.60 45.0 4.25e-01 100.0% 66.7%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.59 43.0 4.20e-01 87.2% 87.7%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 46.0 3.55e-01 100.0% 38.5%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 49.0 4.27e-01 100.0% 64.5%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 48.0 4.32e-01 100.0% 100.0%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 48.0 4.65e-01 100.0% 100.0%
8hnzA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 46.0 2.80e-01 95.7% 24.3%
1whyA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 44.0 3.99e-01 93.6% 100.0%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 41.0 4.15e-01 95.7% 97.8%
1mc2A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.53 37.0 2.84e-01 76.6% 86.9%
8a6tB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 37.0 2.82e-01 78.7% 68.6%
3unvA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.52 34.0 2.17e-01 72.3% 30.9%
5lqdD01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 34.0 2.29e-01 76.6% 17.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620499 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.64 45.0 4.75e-01 100.0% 87.5%
3973684 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 39.0 2.76e-01 100.0% 22.2%
3237238 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 54.0 3.99e-01 100.0% 39.2%
3659589 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 52.0 4.71e-01 100.0% 70.8%
3177365 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 50.0 4.68e-01 95.7% 76.7%
3618024 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.59 50.0 4.38e-01 100.0% 77.3%
3592371 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 45.0 3.51e-01 100.0% 36.0%
3840946 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.58 52.0 4.33e-01 100.0% 63.7%
3670046 376.1.1.93 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N 0.58 48.0 4.07e-01 100.0% 54.1%
3618459 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 46.0 4.39e-01 89.4% 74.5%
3432956 376.1.1.93 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N 0.58 47.0 4.06e-01 100.0% 55.4%
3829583 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 50.0 4.23e-01 100.0% 60.0%
3711991 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 47.0 3.60e-01 100.0% 38.5%
3199044 5001.1.1.88 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › STE2 0.57 40.0 2.54e-01 74.5% 75.4%
3690730 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 51.0 4.26e-01 100.0% 62.5%
4246607 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 50.0 4.12e-01 100.0% 65.9%
3907181 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 49.0 3.94e-01 100.0% 58.9%
3749618 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.56 49.0 3.85e-01 100.0% 52.0%
4366971 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.56 42.0 4.11e-01 89.4% 92.7%
4211249 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 47.0 4.28e-01 97.9% 81.5%
5020208 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.24e-01 93.6% 94.0%
3548220 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.55 42.0 4.15e-01 100.0% 78.0%
3718286 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.55 44.0 4.05e-01 100.0% 71.4%
3996543 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.54 44.0 2.89e-01 97.9% 60.0%
3794522 2488.1.1.7 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.53 42.0 3.09e-01 95.7% 90.0%
4945002 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 40.0 4.07e-01 93.6% 97.8%
3621807 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.53 41.0 3.32e-01 95.7% 43.2%
4927454 386.1.1.418 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-FPG_IleRS 0.52 42.0 4.26e-01 97.9% 97.8%
4882126 4952.1.1.2 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.51 33.0 2.07e-01 80.9% 11.3%
5000687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.65e-01 95.7% 75.9%