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OP121182.1__UVD31966.1__X__00025

Bact-Vir

OP121182.1__UVD31966.1__X__00025

Identity

Accession:
OP121182 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_Va_Val-yong3

TaxID: 2972438

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-212
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19475.5 best DUF6012 195.1 1.30e-57 99.5% 97.5%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.72 31.0 4.06e-01 88.2% 68.5%
4rs1B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 30.0 4.27e-01 87.7% 82.5%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 30.0 4.04e-01 86.3% 77.0%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 28.0 4.17e-01 86.7% 88.0%
1cd9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 28.0 3.98e-01 87.2% 87.8%
4cu7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 31.0 4.00e-01 87.2% 81.0%
4kkpA01 2.60.40.3880 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 29.0 3.66e-01 85.8% 84.2%
2c1iA01 3.30.565.50 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.54 21.0 2.88e-01 86.3% 65.8%
4r7vA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 32.0 3.74e-01 88.6% 84.6%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 23.0 3.18e-01 83.9% 81.2%
4tshB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 31.0 3.42e-01 85.8% 72.3%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.51 31.0 3.77e-01 89.1% 91.2%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 20.0 3.28e-01 91.0% 97.4%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 21.0 3.23e-01 96.7% 95.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971867 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.93 77.0 8.41e-01 98.6% 99.4%
5040306 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.79 28.0 4.30e-01 87.2% 75.6%
3563799 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 32.0 4.66e-01 86.7% 89.0%
4263062 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.64 26.0 3.86e-01 81.5% 84.4%
3941088 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 27.0 3.47e-01 88.2% 83.5%
4534466 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 23.0 3.41e-01 95.7% 88.4%
3491696 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 30.0 3.55e-01 81.0% 77.3%
3491153 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 29.0 3.40e-01 81.0% 74.8%
4999027 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 20.0 3.36e-01 82.0% 100.0%
3319581 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.51 37.0 4.11e-01 88.6% 94.5%
D2 high residues 241-326
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.66 48.0 4.78e-01 90.7% 73.9%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 36.0 3.88e-01 81.4% 67.6%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 34.0 3.45e-01 86.0% 54.2%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.59 50.0 4.43e-01 100.0% 64.0%
3fd0A01 3.90.1150.60 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Methioning gamme-lyase, C-terminal domain 0.58 43.0 3.32e-01 77.9% 100.0%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 51.0 3.32e-01 98.8% 33.8%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.37e-01 94.2% 32.4%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.58 31.0 3.64e-01 75.6% 77.2%
3duzA02 2.40.50.710 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 32.0 3.86e-01 86.0% 87.0%
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.57 41.0 3.73e-01 75.6% 56.0%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.57 51.0 4.58e-01 100.0% 95.8%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.57 47.0 4.20e-01 90.7% 92.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.57 34.0 3.98e-01 79.1% 86.7%
7ffnN01 2.60.40.3200 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, A domain 0.55 47.0 3.76e-01 96.5% 60.2%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 4.27e-01 90.7% 96.8%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 3.19e-01 94.2% 33.8%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 47.0 3.12e-01 97.7% 33.1%
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 46.0 3.15e-01 94.2% 59.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 46.0 3.09e-01 97.7% 30.1%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 45.0 3.63e-01 95.3% 65.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.69e-01 83.7% 83.1%
1dymA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.52 41.0 2.77e-01 89.5% 59.7%
2w2jA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 45.0 3.25e-01 100.0% 78.0%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 33.0 3.51e-01 91.9% 75.0%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 40.0 2.82e-01 84.9% 56.9%
2jmcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 33.0 3.45e-01 95.3% 75.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.62 42.0 4.68e-01 80.2% 90.8%
None — 0.60 41.0 2.47e-01 72.1% 40.5%
3866352 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.60 42.0 2.47e-01 72.1% 39.5%
4018808 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.58 51.0 4.65e-01 100.0% 97.5%
3430385 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.58 40.0 3.53e-01 100.0% 49.6%
3990857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 34.0 3.92e-01 79.1% 83.3%
3552306 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.57 45.0 4.18e-01 93.0% 67.3%
3209967 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.57 41.0 3.15e-01 74.4% 91.4%
3795223 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 32.0 3.30e-01 75.6% 54.1%
3278719 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.56 42.0 3.64e-01 90.7% 50.0%
3283270 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.56 42.0 3.66e-01 91.9% 50.0%
3278665 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.56 42.0 3.62e-01 91.9% 49.7%
5028784 2484.1.1.117 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.55 48.0 3.54e-01 98.8% 56.2%
3682129 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.55 47.0 3.18e-01 97.7% 26.1%
3969957 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.55 47.0 3.73e-01 97.7% 65.8%
3968296 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.98e-01 88.4% 32.9%
3994738 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 45.0 3.03e-01 93.0% 38.6%
3271259 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 36.0 3.65e-01 89.5% 69.4%
3194837 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 44.0 2.86e-01 89.5% 88.2%
3592141 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 43.0 3.51e-01 94.2% 46.6%
3572575 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 44.0 3.04e-01 93.0% 38.4%
3294906 5.1.5.86 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 0.53 44.0 3.07e-01 94.2% 42.0%
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 35.0 3.71e-01 76.7% 78.7%
3613742 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 2.86e-01 97.7% 18.9%
3568289 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 43.0 2.99e-01 94.2% 39.3%
3605676 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 44.0 2.91e-01 98.8% 22.1%
4953042 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.51 34.0 3.53e-01 76.7% 73.8%
3236317 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.81e-01 87.2% 93.3%