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OP125547.1__UVD32023.1__vBKpnPKlyazma_orf028__00028
Bact-VirOP125547.1__UVD32023.1__vBKpnPKlyazma_orf028__00028
Identity
- Accession:
- OP125547 ↗
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zobellviridae›
Citrovirus›
Klebsiella_phage_vB_KpnP_Klyazma
TaxID: 2972439
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-34
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.99 | 90.0 | 5.64e-01 | 100.0% | 22.4% |
| 4fymF00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.98 | 89.0 | 5.18e-01 | 100.0% | 14.4% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.98 | 88.0 | 7.55e-01 | 100.0% | 65.2% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.98 | 87.0 | 5.67e-01 | 100.0% | 25.9% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.98 | 87.0 | 5.49e-01 | 100.0% | 22.4% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.97 | 86.0 | 7.35e-01 | 100.0% | 63.8% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.97 | 86.0 | 5.60e-01 | 100.0% | 25.9% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.95 | 86.0 | 6.43e-01 | 100.0% | 43.5% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.95 | 84.0 | 5.79e-01 | 100.0% | 32.6% |
| 3gffA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.95 | 85.0 | 4.76e-01 | 100.0% | 9.5% |
| 2vkpB00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.94 | 85.0 | 5.60e-01 | 100.0% | 27.5% |
| 4ebjA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.94 | 81.0 | 5.18e-01 | 100.0% | 23.1% |
| 3htmA02 | 6.10.250.3030 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.94 | 84.0 | 7.60e-01 | 100.0% | 75.0% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.94 | 80.0 | 7.16e-01 | 100.0% | 86.0% |
| 3hqiA02 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.93 | 83.0 | 5.18e-01 | 100.0% | 21.4% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.92 | 78.0 | 6.59e-01 | 100.0% | 57.7% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.92 | 79.0 | 5.62e-01 | 100.0% | 34.9% |
| 4k51B00 | 1.25.40.860 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.91 | 75.0 | 4.71e-01 | 100.0% | 18.9% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.91 | 76.0 | 5.72e-01 | 100.0% | 40.0% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.90 | 76.0 | 6.00e-01 | 100.0% | 46.9% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.90 | 77.0 | 5.16e-01 | 100.0% | 26.5% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.90 | 74.0 | 5.01e-01 | 100.0% | 26.5% |
| 4k7bA00 | 1.20.120.1740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like | 0.90 | 73.0 | 4.98e-01 | 100.0% | 27.0% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.90 | 75.0 | 4.47e-01 | 100.0% | 14.6% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.90 | 76.0 | 4.98e-01 | 100.0% | 24.2% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.90 | 76.0 | 6.31e-01 | 100.0% | 54.5% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.90 | 73.0 | 5.89e-01 | 100.0% | 47.6% |
| 3i3nA01 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.89 | 77.0 | 4.88e-01 | 100.0% | 21.7% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.88 | 73.0 | 5.37e-01 | 100.0% | 36.6% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.87 | 71.0 | 5.43e-01 | 100.0% | 54.7% |
| 3lcvB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.87 | 70.0 | 4.23e-01 | 100.0% | 14.9% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.86 | 73.0 | 4.77e-01 | 100.0% | 23.4% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.86 | 73.0 | 6.03e-01 | 100.0% | 54.5% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.86 | 68.0 | 5.87e-01 | 100.0% | 56.6% |
| 2mpcA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.85 | 68.0 | 4.98e-01 | 100.0% | 33.3% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.84 | 67.0 | 4.93e-01 | 100.0% | 34.5% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.82 | 67.0 | 4.37e-01 | 100.0% | 23.9% |
| 2hnhA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.82 | 66.0 | 3.84e-01 | 96.7% | 28.9% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.82 | 63.0 | 5.45e-01 | 100.0% | 78.6% |
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.77 | 65.0 | 5.24e-01 | 96.7% | 50.0% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 60.0 | 5.33e-01 | 100.0% | 60.8% |
| 4tq1A03 | 1.10.246.190 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain | 0.76 | 59.0 | 4.92e-01 | 96.7% | 48.3% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 51.0 | 3.46e-01 | 100.0% | 19.4% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.65 | 54.0 | 4.43e-01 | 100.0% | 45.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3552824 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 1.00 | 92.0 | 5.28e-01 | 100.0% | 13.3% |
| 3240245 | 192.17.1.1 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn | 1.00 | 92.0 | 7.53e-01 | 100.0% | 60.0% |
| 3742038 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 1.00 | 91.0 | 5.26e-01 | 100.0% | 13.3% |
| 3738395 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.99 | 91.0 | 5.19e-01 | 100.0% | 12.8% |
| 4930709 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.99 | 90.0 | 5.29e-01 | 100.0% | 15.4% |
| 5053329 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.99 | 90.0 | 5.75e-01 | 100.0% | 25.0% |
| 3711291 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.98 | 89.0 | 6.90e-01 | 100.0% | 50.0% |
| 4433045 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.98 | 89.0 | 5.57e-01 | 100.0% | 22.2% |
| 3280308 | 192.11.1.0 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB | 0.98 | 88.0 | 8.33e-01 | 100.0% | 85.7% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.98 | 88.0 | 6.15e-01 | 100.0% | 35.3% |
| 5036797 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.98 | 87.0 | 5.27e-01 | 100.0% | 17.6% |
| 4930198 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.98 | 88.0 | 6.82e-01 | 100.0% | 50.0% |
| 3900350 | 7005.1.1.2 ↗ | a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › LTM | 0.97 | 88.0 | 7.57e-01 | 100.0% | 66.7% |
| 4023890 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.97 | 88.0 | 6.27e-01 | 100.0% | 38.0% |
| 3230775 | 192.1.1.25 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C | 0.97 | 87.0 | 5.71e-01 | 100.0% | 27.3% |
| 3788436 | 5076.2.1.9 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo | 0.97 | 85.0 | 4.70e-01 | 100.0% | 8.2% |
| 3182551 | 5076.2.1.9 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo | 0.97 | 85.0 | 4.82e-01 | 100.0% | 10.7% |
| 4066875 | 7005.1.1.2 ↗ | a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › LTM | 0.95 | 84.0 | 7.01e-01 | 100.0% | 60.0% |
| 3441654 | 109.3.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 | 0.95 | 82.0 | 4.55e-01 | 100.0% | 8.5% |
| 3266678 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.94 | 80.0 | 6.22e-01 | 100.0% | 46.2% |
| 4936633 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.93 | 80.0 | 4.74e-01 | 100.0% | 14.6% |
| 4883518 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.92 | 78.0 | 6.01e-01 | 100.0% | 44.1% |
| 991025 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.92 | 80.0 | 7.04e-01 | 100.0% | 66.7% |
| 1869443 | 226.1.1.2 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 | 0.92 | 81.0 | 6.09e-01 | 100.0% | 42.9% |
| 3965757 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.92 | 79.0 | 5.33e-01 | 100.0% | 28.6% |
| 4562960 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.91 | 79.0 | 5.36e-01 | 100.0% | 28.6% |
| 3227443 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.90 | 76.0 | 5.99e-01 | 100.0% | 46.9% |
| 4104683 | 159.1.2.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH | 0.90 | 79.0 | 5.34e-01 | 100.0% | 28.6% |
| 3943776 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.90 | 76.0 | 4.96e-01 | 100.0% | 23.1% |
| 5061540 | 2498.1.1.147 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7897 | 0.90 | 77.0 | 4.31e-01 | 100.0% | 9.1% |
| 3616364 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.90 | 73.0 | 4.31e-01 | 100.0% | 12.8% |
| 3448126 | 5014.1.1.0 ↗ | extended segments › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor | 0.89 | 70.0 | 7.08e-01 | 90.0% | 90.0% |
| 4973347 | 515.1.1.4 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 | 0.89 | 71.0 | 4.43e-01 | 100.0% | 17.1% |
| 5039485 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.87 | 72.0 | 4.33e-01 | 100.0% | 15.0% |
| 4960168 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.85 | 70.0 | 4.39e-01 | 100.0% | 18.2% |
| 4949471 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.85 | 70.0 | 4.33e-01 | 100.0% | 17.1% |
| 4319920 | 7524.1.1.2 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh | 0.82 | 71.0 | 3.89e-01 | 100.0% | 6.9% |
| 3213282 | 616.1.1.21 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 | 0.79 | 63.0 | 4.92e-01 | 100.0% | 41.3% |
| 3914660 | 604.1.1.95 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C | 0.79 | 60.0 | 4.61e-01 | 100.0% | 35.3% |
| 4100663 | 7575.1.1.11 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 | 0.75 | 61.0 | 3.48e-01 | 100.0% | 9.4% |
| 3599638 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.73 | 55.0 | 3.28e-01 | 96.7% | 11.3% |