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OP125547.1__UVD32056.1__vBKpnPKlyazma_orf061__00061

Bact-Vir

OP125547.1__UVD32056.1__vBKpnPKlyazma_orf061__00061

Identity

Accession:
OP125547 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Citrovirus› Klebsiella_phage_vB_KpnP_Klyazma

TaxID: 2972439

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-64
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 73.0 7.51e-01 100.0% 98.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 57.0 6.11e-01 100.0% 91.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.25e-01 100.0% 63.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.46e-01 100.0% 69.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.84e-01 98.2% 79.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.39e-01 100.0% 69.1%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.74 68.0 6.38e-01 100.0% 91.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.77e-01 100.0% 79.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 55.0 5.35e-01 100.0% 73.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.94e-01 100.0% 83.9%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 5.92e-01 100.0% 93.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.40e-01 100.0% 72.9%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 5.28e-01 100.0% 63.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.05e-01 100.0% 68.1%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.56e-01 100.0% 77.0%
2kssA01 2.30.30.630 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.90e-01 100.0% 98.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 60.0 5.71e-01 100.0% 98.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.68 58.0 5.70e-01 100.0% 88.9%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.61e-01 100.0% 91.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.52e-01 100.0% 91.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.34e-01 100.0% 80.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.65 55.0 3.83e-01 100.0% 27.5%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.03e-01 100.0% 85.5%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.28e-01 100.0% 92.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.45e-01 100.0% 90.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.49e-01 100.0% 92.2%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.31e-01 100.0% 93.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 50.0 5.01e-01 100.0% 86.4%
4y85C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 51.0 3.97e-01 91.2% 92.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.06e-01 100.0% 84.8%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.03e-01 91.2% 91.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.33e-01 100.0% 81.0%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.94e-01 87.7% 63.0%
4g3cA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 48.0 3.77e-01 94.7% 82.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.61e-01 100.0% 89.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.17e-01 98.2% 81.8%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 42.0 3.97e-01 100.0% 66.2%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 37.0 3.43e-01 89.5% 52.1%
1nnjA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.56 46.0 3.71e-01 100.0% 59.8%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.55e-01 96.5% 95.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.85 73.0 6.73e-01 100.0% 74.6%
4024411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 55.0 5.65e-01 100.0% 72.7%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.80 58.0 5.96e-01 100.0% 80.0%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.79 59.0 3.92e-01 100.0% 21.4%
1289661 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.77 58.0 5.48e-01 100.0% 67.2%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.76 57.0 5.94e-01 100.0% 86.5%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 60.0 5.78e-01 100.0% 75.4%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 57.0 5.29e-01 100.0% 67.1%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 61.0 5.83e-01 100.0% 80.0%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.72 57.0 5.52e-01 100.0% 76.6%
3776390 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.72 63.0 4.99e-01 100.0% 48.7%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.72 57.0 4.70e-01 100.0% 49.0%
3929260 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.68e-01 100.0% 87.3%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 4.81e-01 100.0% 57.6%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 60.0 5.65e-01 100.0% 80.0%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 61.0 6.07e-01 100.0% 98.3%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 61.0 5.68e-01 100.0% 81.4%
3842062 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.68 60.0 5.00e-01 100.0% 57.0%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.97e-01 100.0% 95.0%
4093354 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 59.0 5.58e-01 100.0% 88.6%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.67 49.0 5.01e-01 100.0% 81.8%
3879164 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.67 59.0 5.42e-01 100.0% 76.0%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 4.72e-01 100.0% 50.9%
3725260 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 5.24e-01 98.2% 78.6%
3864347 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 57.0 5.48e-01 100.0% 95.4%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 49.0 4.67e-01 100.0% 68.6%
3939941 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.64 59.0 4.42e-01 100.0% 85.4%
3401198 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 53.0 4.64e-01 100.0% 71.1%
4537356 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.62 52.0 5.12e-01 94.7% 98.3%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 50.0 4.72e-01 100.0% 77.1%
4071792 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.58 49.0 3.84e-01 100.0% 59.3%
3230056 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 44.0 3.69e-01 84.2% 68.6%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 44.0 4.14e-01 100.0% 66.7%
3218843 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.57 44.0 3.90e-01 84.2% 88.2%
4053705 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.57 48.0 3.79e-01 100.0% 66.7%
4263760 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.56 48.0 3.85e-01 100.0% 64.2%
4202644 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.54 45.0 3.60e-01 100.0% 60.8%
3482844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.09e-01 100.0% 81.2%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.52 40.0 3.95e-01 100.0% 76.9%
3263824 2007.1.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.52 40.0 2.74e-01 93.0% 57.6%
4021662 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.51 42.0 3.28e-01 98.2% 56.6%