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OP125547.1__UVD32061.1__vBKpnPKlyazma_orf066__00066

Bact-Vir

OP125547.1__UVD32061.1__vBKpnPKlyazma_orf066__00066

Identity

Accession:
OP125547 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Citrovirus› Klebsiella_phage_vB_KpnP_Klyazma

TaxID: 2972439

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: rep: MK892760__QDP61644.1__Unbinned8261contig1001-17__00018__D3-61
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.58 37.0 3.98e-01 79.1% 77.2%
1m4uA01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.56 40.0 3.29e-01 82.1% 39.5%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.56 39.0 3.14e-01 82.1% 33.3%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.55 40.0 3.59e-01 79.1% 87.9%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 37.0 2.90e-01 76.1% 86.1%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.53 39.0 3.14e-01 82.1% 54.9%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 41.0 3.48e-01 86.6% 69.7%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.51 34.0 3.44e-01 89.6% 67.6%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 35.0 3.11e-01 71.6% 89.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3613140 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.57 39.0 2.42e-01 70.1% 12.7%
3601915 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.57 39.0 2.60e-01 70.1% 17.4%
3942256 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.55 43.0 2.64e-01 98.5% 11.7%
3357183 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 36.0 2.74e-01 76.1% 30.0%
3387999 2003.2.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.52 41.0 3.04e-01 94.0% 62.7%
3998929 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.35e-01 89.6% 53.1%
4639306 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.51 38.0 2.23e-01 98.5% 7.7%
4941197 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.79e-01 74.6% 48.8%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.51 33.0 3.00e-01 79.1% 46.3%
4832855 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.51 38.0 3.57e-01 82.1% 65.5%
3761570 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.51 29.0 2.48e-01 71.6% 32.2%