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OP125547.1__UVD32067.1__vBKpnPKlyazma_orf072__00072

Bact-Vir

OP125547.1__UVD32067.1__vBKpnPKlyazma_orf072__00072

Identity

Accession:
OP125547 ↗
Kingdom:
phage

Quality

67.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Citrovirus› Klebsiella_phage_vB_KpnP_Klyazma

TaxID: 2972439

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-56
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.76 56.0 4.18e-01 100.0% 32.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 52.0 4.12e-01 100.0% 35.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 4.80e-01 100.0% 60.0%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.09e-01 100.0% 72.3%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 45.0 3.19e-01 92.1% 23.5%
7pi0S01 1.10.3460.10 Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain 0.65 50.0 3.36e-01 100.0% 27.1%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 44.0 3.19e-01 100.0% 26.2%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.62 47.0 3.93e-01 97.4% 47.1%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 50.0 4.50e-01 100.0% 86.4%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.61 44.0 2.70e-01 81.6% 22.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 3.56e-01 94.7% 40.0%
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 3.15e-01 97.4% 28.2%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 45.0 2.74e-01 86.8% 12.4%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.60 45.0 3.57e-01 100.0% 37.3%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 3.64e-01 94.7% 43.2%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.09e-01 84.2% 68.5%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 42.0 4.21e-01 94.7% 74.4%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.59 43.0 2.57e-01 84.2% 9.3%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 3.65e-01 100.0% 70.8%
1jmxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.40e-01 97.4% 56.5%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 41.0 2.78e-01 78.9% 86.6%
2l6lA02 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.58 45.0 3.92e-01 100.0% 53.8%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.58 44.0 3.67e-01 94.7% 54.2%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.58 43.0 3.63e-01 94.7% 51.8%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 44.0 3.24e-01 94.7% 89.8%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.55 41.0 3.00e-01 86.8% 84.6%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.55 41.0 3.05e-01 92.1% 50.0%
4e80C01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.55 38.0 2.44e-01 78.9% 16.7%
3qwnA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.54 43.0 3.04e-01 94.7% 52.2%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 41.0 2.53e-01 92.1% 33.3%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.02e-01 92.1% 45.7%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 39.0 3.00e-01 94.7% 64.9%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 45.0 3.29e-01 100.0% 37.3%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.52 41.0 2.50e-01 94.7% 64.0%
2f4qA01 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.52 38.0 3.36e-01 92.1% 79.2%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 42.0 3.15e-01 97.4% 42.5%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.56e-01 81.6% 25.0%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.59e-01 84.2% 24.6%
2i00A03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.50 37.0 2.82e-01 81.6% 35.8%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712185 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.77 57.0 4.54e-01 78.9% 80.0%
4928607 152.1.2.0 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit 0.77 54.0 4.50e-01 73.7% 100.0%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 51.0 4.40e-01 100.0% 46.2%
5043091 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 51.0 4.30e-01 100.0% 44.1%
4994951 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.71 53.0 3.74e-01 86.8% 93.1%
3946659 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 50.0 4.29e-01 100.0% 46.2%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.69 50.0 4.12e-01 100.0% 41.7%
4994745 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 49.0 3.86e-01 100.0% 33.0%
5045701 221.1.3.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.67 55.0 3.92e-01 100.0% 65.9%
4891268 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.67 50.0 4.28e-01 94.7% 47.8%
4946274 152.1.1.0 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 0.65 55.0 4.32e-01 94.7% 93.8%
3068467 5077.1.1.1 ↗ extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chloroa_b-bind 0.65 49.0 3.10e-01 100.0% 19.8%
4493573 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.64 47.0 3.02e-01 84.2% 29.5%
2698385 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.61 41.0 2.90e-01 76.3% 18.6%
4179803 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.61 45.0 2.95e-01 84.2% 31.5%
3832176 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.61 43.0 3.70e-01 78.9% 54.3%
4472417 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.61 45.0 3.00e-01 84.2% 22.2%
3210401 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 48.0 2.79e-01 94.7% 26.7%
2966548 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.60 41.0 2.76e-01 84.2% 15.8%
3213954 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.60 44.0 2.90e-01 84.2% 25.3%
3717674 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 44.0 3.40e-01 100.0% 33.3%
3280153 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 43.0 2.54e-01 84.2% 66.9%
3685646 109.4.1.1158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO11 0.59 44.0 2.55e-01 86.8% 27.0%
3276653 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.59 44.0 2.71e-01 86.8% 72.0%
3486540 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 44.0 2.85e-01 92.1% 28.2%
4411013 242.2.1.1 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › DUF61 0.59 43.0 3.94e-01 100.0% 56.7%
3292448 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.59 42.0 2.77e-01 84.2% 32.2%
3180626 4.8.1.36 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7141 0.58 45.0 4.19e-01 100.0% 68.0%
3599462 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.58 42.0 2.56e-01 84.2% 23.4%
5071720 242.2.1.1 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › DUF61 0.58 42.0 4.07e-01 100.0% 68.0%
3743854 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.58 45.0 2.50e-01 86.8% 84.0%
4182876 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 43.0 2.82e-01 84.2% 28.8%
3022650 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.58 43.0 2.81e-01 86.8% 74.9%
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 41.0 3.78e-01 100.0% 55.0%
3939634 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.57 50.0 3.54e-01 100.0% 33.9%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.57 43.0 2.87e-01 100.0% 20.4%
4500383 316.1.1.26 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.57 44.0 2.90e-01 89.5% 75.1%
4020140 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 2.85e-01 73.7% 26.4%
5037474 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.57 43.0 2.52e-01 92.1% 44.5%
3178010 109.4.1.526 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.57 42.0 2.57e-01 97.4% 11.4%
4234516 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.56 45.0 2.71e-01 100.0% 11.3%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 49.0 3.74e-01 100.0% 52.2%
4484622 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 46.0 3.59e-01 100.0% 76.7%
4965712 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 36.0 2.81e-01 71.1% 25.3%
3288748 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.54 42.0 2.49e-01 94.7% 22.6%
4161761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.29e-01 100.0% 40.0%
4660169 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.53 41.0 3.28e-01 94.7% 88.4%
1578286 2002.1.1.156 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fas1-AflB-like_hel 0.52 36.0 2.17e-01 73.7% 68.1%
3612587 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 38.0 3.55e-01 94.7% 61.7%
3305631 375.1.1.184 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.52 43.0 3.56e-01 100.0% 50.7%
3964746 101.1.2.628 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26433 0.52 36.0 2.87e-01 84.2% 67.6%
3731934 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 38.0 2.22e-01 100.0% 68.8%
3184752 620.1.1.4 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 0.52 41.0 2.81e-01 100.0% 44.1%
4929593 304.139.1.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR 0.52 38.0 2.33e-01 92.1% 31.6%
1681454 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.51 36.0 2.59e-01 71.1% 53.4%
3553587 558.1.1.21 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N 0.51 37.0 2.90e-01 94.7% 52.2%
3260618 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.50 39.0 2.86e-01 92.1% 50.0%