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OP131296.1__UWJ03901.1__Skadi8_35__00034
Bact-VirOP131296.1__UWJ03901.1__Skadi8_35__00034
Identity
- Accession:
- OP131296 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 2971106
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-59
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.83 | 56.0 | 4.60e-01 | 70.0% | 48.8% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 56.0 | 5.46e-01 | 72.0% | 79.6% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.76 | 51.0 | 5.39e-01 | 70.0% | 82.2% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.75 | 53.0 | 5.09e-01 | 74.0% | 94.6% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.74 | 56.0 | 4.83e-01 | 80.0% | 94.6% |
| 3cqcA00 | 1.20.190.50 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.74 | 51.0 | 3.20e-01 | 72.0% | 18.2% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.72 | 64.0 | 4.29e-01 | 100.0% | 48.1% |
| 4i1eA03 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.71 | 49.0 | 3.50e-01 | 72.0% | 25.9% |
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 58.0 | 3.90e-01 | 92.0% | 82.2% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.67 | 57.0 | 3.84e-01 | 98.0% | 46.3% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.65 | 56.0 | 3.79e-01 | 98.0% | 41.2% |
| 3dliA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 42.0 | 2.83e-01 | 72.0% | 16.7% |
| 5fgzA02 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.62 | 48.0 | 3.33e-01 | 84.0% | 31.9% |
| 4nv1E01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.62 | 55.0 | 3.75e-01 | 100.0% | 34.4% |
| 4cclA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.61 | 43.0 | 3.00e-01 | 76.0% | 54.8% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.60 | 42.0 | 3.92e-01 | 74.0% | 76.1% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 4.22e-01 | 90.0% | 80.9% |
| 2o61A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 47.0 | 3.70e-01 | 98.0% | 48.2% |
| 1z05A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.32e-01 | 72.0% | 54.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.86 | 74.0 | 6.89e-01 | 100.0% | 76.7% |
| 3785454 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.86 | 58.0 | 4.42e-01 | 70.0% | 37.1% |
| 3989824 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.85 | 58.0 | 5.80e-01 | 70.0% | 80.0% |
| 3507551 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.85 | 59.0 | 4.63e-01 | 72.0% | 42.1% |
| 3465927 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.84 | 56.0 | 4.79e-01 | 70.0% | 43.8% |
| 3864929 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.84 | 56.0 | 4.62e-01 | 70.0% | 55.3% |
| 3231243 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.84 | 74.0 | 4.54e-01 | 100.0% | 77.6% |
| 3473016 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.83 | 69.0 | 5.21e-01 | 92.0% | 77.4% |
| 3695034 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.82 | 55.0 | 3.21e-01 | 70.0% | 10.4% |
| 4984419 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.82 | 56.0 | 3.50e-01 | 72.0% | 16.9% |
| 3566072 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.81 | 57.0 | 5.05e-01 | 74.0% | 61.4% |
| 3630495 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.79 | 57.0 | 4.40e-01 | 74.0% | 38.0% |
| 407167 | 3824.1.1.1 ↗ | alpha bundles › HIV Rev › HIV Rev › HIV Rev › REV | 0.78 | 54.0 | 5.00e-01 | 74.0% | 58.1% |
| 3975961 | 5058.1.1.88 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 | 0.77 | 54.0 | 4.25e-01 | 74.0% | 49.0% |
| 3450594 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.75 | 58.0 | 4.52e-01 | 82.0% | 91.0% |
| 3761638 | 109.30.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin Nup84/Nup107 › Nucleoporin Nup84/Nup107 › Nup84_Nup100 | 0.74 | 51.0 | 3.12e-01 | 72.0% | 15.3% |
| 3233494 | 637.1.1.0 ↗ | alpha arrays › Ribosomal protein L19 (L19e) N-terminal domain › Ribosomal protein L19 (L19e) N-terminal domain › Ribosomal protein L19 (L19e) N-terminal domain | 0.74 | 51.0 | 4.34e-01 | 72.0% | 66.3% |
| 3399005 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.73 | 51.0 | 4.19e-01 | 74.0% | 82.2% |
| 3749813 | 3567.1.1.110 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › 2TM_P5A-ATPase | 0.71 | 51.0 | 4.45e-01 | 76.0% | 72.0% |
| 3102719 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.70 | 53.0 | 3.67e-01 | 82.0% | 69.5% |
| 2643987 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.68 | 60.0 | 5.57e-01 | 100.0% | 78.1% |
| 3569968 | 4336.1.1.3 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › COMPASS-Shg1 | 0.63 | 47.0 | 3.71e-01 | 82.0% | 65.5% |
| 3544505 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 44.0 | 4.67e-01 | 74.0% | 82.2% |
| 3314055 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.62 | 49.0 | 4.30e-01 | 86.0% | 58.1% |
| 3785572 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 51.0 | 4.17e-01 | 98.0% | 87.0% |
| 3023635 | 5071.1.1.1 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge | 0.60 | 42.0 | 3.63e-01 | 74.0% | 59.3% |
| 3397051 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.60 | 50.0 | 2.98e-01 | 98.0% | 51.5% |
| 3917192 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.56 | 49.0 | 2.90e-01 | 100.0% | 32.1% |