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OP131296.1__UWJ03903.1__Skadi8_37__00036

Bact-Vir

OP131296.1__UWJ03903.1__Skadi8_37__00036

Identity

Accession:
OP131296 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_Skadi-8_EXVC108P

TaxID: 2971106

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 41.0 3.79e-01 81.5% 49.1%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 41.0 3.64e-01 81.5% 47.4%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 38.0 3.41e-01 79.3% 43.5%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 37.0 3.60e-01 77.2% 54.7%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.66e-01 83.7% 52.4%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 43.0 3.97e-01 81.5% 61.4%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.77e-01 81.5% 56.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 36.0 4.12e-01 92.4% 86.6%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.83e-01 92.4% 60.3%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 40.0 3.69e-01 78.3% 57.1%
4mn5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 40.0 3.86e-01 79.3% 66.0%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 40.0 3.74e-01 81.5% 59.8%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.60e-01 80.4% 63.4%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 49.0 4.18e-01 96.7% 61.0%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 36.0 3.37e-01 78.3% 53.5%
5hwtB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 46.0 4.16e-01 89.1% 75.4%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.56e-01 77.2% 58.8%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 36.0 3.98e-01 90.2% 88.7%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.48e-01 80.4% 65.6%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.86e-01 84.8% 66.9%
5svgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.71e-01 85.9% 61.2%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.87e-01 78.3% 73.5%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 36.0 3.63e-01 87.0% 68.4%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 34.0 3.64e-01 88.0% 76.2%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.67e-01 85.9% 57.2%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 35.0 3.93e-01 95.7% 87.7%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 43.0 3.63e-01 93.5% 73.7%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.82e-01 81.5% 74.5%
2jemA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 45.0 3.47e-01 100.0% 72.4%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.59e-01 80.4% 64.8%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 46.0 3.69e-01 96.7% 51.1%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.52 34.0 3.73e-01 85.9% 85.9%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.83e-01 83.7% 76.1%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.23e-01 76.1% 59.4%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.83e-01 81.5% 77.7%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.39e-01 78.3% 58.5%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 41.0 3.45e-01 89.1% 69.9%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.61e-01 83.7% 87.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040002 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.66 43.0 4.02e-01 81.5% 53.9%
4400500 223.1.1.132 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, sCache_3_2 0.66 39.0 2.72e-01 80.4% 18.6%
4949933 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.65 44.0 3.10e-01 84.8% 23.6%
5041270 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.62 42.0 2.80e-01 82.6% 18.3%
4980695 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 43.0 4.05e-01 83.7% 60.0%
3193015 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 42.0 3.81e-01 83.7% 53.3%
4968953 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 46.0 4.13e-01 82.6% 79.2%
235820 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.58 43.0 3.97e-01 81.5% 61.4%
4078667 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 48.0 3.18e-01 91.3% 23.4%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 49.0 5.07e-01 95.7% 100.0%
3479176 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 35.0 3.71e-01 79.3% 68.8%
None — 0.56 46.0 3.57e-01 91.3% 41.0%
5061582 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 41.0 3.76e-01 79.3% 58.3%
3498230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 35.0 3.71e-01 79.3% 70.0%
3972571 223.1.1.111 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, PAS_9 0.56 42.0 3.00e-01 79.3% 28.5%
3737772 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 44.0 4.07e-01 82.6% 71.3%
5002763 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 41.0 4.55e-01 80.4% 100.0%
4943045 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 3.88e-01 77.2% 70.9%
3959244 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 42.0 4.27e-01 83.7% 81.1%
4300729 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.36e-01 82.6% 40.5%
4999616 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 2.70e-01 81.5% 18.5%
5016022 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.55 38.0 3.34e-01 82.6% 46.4%
3550252 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 43.0 3.95e-01 88.0% 64.2%
3511109 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 35.0 3.68e-01 77.2% 70.6%
3277661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 34.0 3.27e-01 94.6% 54.3%
4951182 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 45.0 3.93e-01 88.0% 63.7%
4370212 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 45.0 3.43e-01 89.1% 40.0%
3967421 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 41.0 3.63e-01 79.3% 69.2%
3988379 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.35e-01 85.9% 41.1%
3206195 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 43.0 3.04e-01 85.9% 31.8%
3670284 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 40.0 3.43e-01 80.4% 49.7%
3400605 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.53 35.0 3.54e-01 78.3% 66.7%
3488565 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 47.0 4.00e-01 96.7% 68.0%
3720784 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.67e-01 79.3% 76.7%
4938888 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 40.0 3.72e-01 81.5% 65.8%
5016940 223.1.1.157 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_3 0.53 36.0 3.60e-01 83.7% 67.4%
3656013 11.1.1.912 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28397 0.53 37.0 3.78e-01 80.4% 75.6%
3978060 4023.1.1.3 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.53 37.0 3.59e-01 71.7% 69.0%
4980710 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 40.0 3.75e-01 82.6% 73.0%
3968891 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 41.0 3.86e-01 83.7% 79.1%
4977587 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.77e-01 84.8% 70.8%
3285565 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.82e-01 89.1% 72.4%
4508852 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 41.0 3.84e-01 87.0% 82.6%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.62e-01 83.7% 75.3%
3687133 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 43.0 3.79e-01 90.2% 70.4%
137752 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 37.0 3.39e-01 78.3% 58.5%
4947486 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 33.0 2.95e-01 80.4% 43.7%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 3.42e-01 70.7% 85.0%
3819047 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 34.0 2.99e-01 80.4% 45.0%
3306468 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.50 35.0 2.85e-01 89.1% 36.7%
4998983 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 44.0 2.64e-01 95.7% 55.3%