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OP131587.1__UYL85415.1__gp13__00013

Bact-Vir

OP131587.1__UYL85415.1__gp13__00013

Identity

Accession:
OP131587 ↗
Kingdom:
phage

Quality

67.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 410-499
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vnaA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 37.0 3.11e-01 100.0% 33.1%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 4.03e-01 71.1% 97.0%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 47.0 3.34e-01 90.0% 70.2%
8amzO01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 41.0 2.72e-01 73.3% 25.0%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.86e-01 70.0% 97.9%
2jv2A00 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 41.0 4.35e-01 97.8% 94.7%
1vz8A02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.55 48.0 4.49e-01 98.9% 88.4%
2wkbA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 40.0 3.97e-01 78.9% 99.0%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.54 39.0 3.84e-01 77.8% 97.0%
4dh4A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 41.0 3.88e-01 83.3% 91.2%
2phcB02 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.54 46.0 4.08e-01 96.7% 97.0%
3it4D02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.54 46.0 4.25e-01 98.9% 78.2%
3cb2A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.51 30.0 2.95e-01 100.0% 49.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957578 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.86 78.0 7.83e-01 96.7% 97.8%
3977755 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.85 75.0 7.70e-01 96.7% 100.0%
1870475 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.83 75.0 7.52e-01 98.9% 95.6%
3943567 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.81 71.0 6.87e-01 94.4% 98.0%
4453960 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.80 66.0 6.95e-01 95.6% 100.0%
4093853 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.78 65.0 6.77e-01 95.6% 97.6%
4565831 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.77 69.0 6.92e-01 97.8% 98.9%
3946544 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.75 68.0 6.48e-01 100.0% 98.1%
3313414 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.61 54.0 5.42e-01 100.0% 98.9%
3479849 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 4.44e-01 73.3% 91.3%
3481990 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.59 46.0 4.88e-01 96.7% 96.2%
4001549 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.59 40.0 2.76e-01 71.1% 97.6%
2875870 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 41.0 4.34e-01 72.2% 90.0%
3610460 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 41.0 4.35e-01 73.3% 91.3%
3218434 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 41.0 4.31e-01 73.3% 91.3%
3395489 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.57 48.0 4.89e-01 100.0% 95.6%
3958072 3117.1.1.0 a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) 0.55 48.0 4.40e-01 98.9% 80.8%
4502082 3117.1.1.1 a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ 0.55 48.0 4.33e-01 100.0% 79.2%
3580586 229.1.1.4 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › Pch2_N 0.55 46.0 4.65e-01 96.7% 94.4%
5045142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.96e-01 72.2% 88.5%
4964172 229.1.1.1 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.53 42.0 4.36e-01 100.0% 96.5%
3744739 101.1.2.466 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.52 40.0 4.28e-01 82.2% 100.0%
D2 medium residues 229-292
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26776.1 best Baseplate_J_N 46.3 6.00e-12 45.3% 50.0%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.85 50.0 4.34e-01 82.8% 41.8%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.78 48.0 4.30e-01 82.8% 47.6%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.72 46.0 4.35e-01 87.5% 55.3%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 48.0 4.10e-01 85.9% 45.1%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 5.62e-01 100.0% 96.5%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.66 58.0 5.75e-01 98.4% 98.5%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 43.0 4.43e-01 76.6% 69.4%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.66 53.0 4.01e-01 100.0% 38.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 50.0 4.86e-01 100.0% 74.6%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 46.0 4.61e-01 84.4% 75.0%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 50.0 4.76e-01 100.0% 72.0%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 46.0 3.97e-01 100.0% 49.5%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 53.0 4.47e-01 100.0% 55.8%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 49.0 4.49e-01 100.0% 65.4%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.63 47.0 4.01e-01 79.7% 51.5%
2wb0X01 1.10.269.10 Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain 0.62 54.0 4.39e-01 95.3% 65.8%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 56.0 4.07e-01 100.0% 97.1%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.62 52.0 5.10e-01 98.4% 93.0%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 51.0 4.98e-01 100.0% 83.8%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 46.0 4.15e-01 100.0% 60.0%
1ulyA02 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 48.0 4.20e-01 93.8% 56.4%
1jb0F00 1.10.8.110 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Photosystem I, reaction centre, subunit PsaF 0.60 44.0 3.50e-01 82.8% 36.9%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.60 42.0 3.86e-01 93.8% 57.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 51.0 4.10e-01 92.2% 78.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.60 46.0 4.41e-01 98.4% 71.1%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.59 45.0 4.07e-01 85.9% 61.2%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.59 48.0 4.58e-01 100.0% 75.0%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.17e-01 100.0% 59.2%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 43.0 4.31e-01 85.9% 78.1%
2g38B00 1.20.1260.20 Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily 0.57 51.0 3.71e-01 98.4% 88.4%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 50.0 5.14e-01 100.0% 98.4%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.56 41.0 4.07e-01 78.1% 74.6%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 49.0 4.56e-01 100.0% 77.9%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 43.0 4.17e-01 95.3% 73.0%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.56 42.0 3.53e-01 92.2% 47.6%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.56 51.0 4.55e-01 100.0% 73.9%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.56 51.0 4.68e-01 100.0% 100.0%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.56 47.0 4.21e-01 100.0% 65.9%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.55 48.0 4.78e-01 100.0% 91.0%
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 50.0 3.92e-01 100.0% 82.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 50.0 4.83e-01 100.0% 98.6%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.54 49.0 4.12e-01 100.0% 91.6%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.53 47.0 4.43e-01 100.0% 80.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.52 47.0 4.21e-01 100.0% 71.1%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 3.78e-01 81.2% 74.3%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.50 29.0 2.90e-01 71.9% 55.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963534 1049.2.1.3 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 0.95 88.0 6.64e-01 96.9% 46.7%
3829206 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.68 54.0 4.92e-01 100.0% 64.7%
3235250 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.67 59.0 5.54e-01 100.0% 83.5%
3387239 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 50.0 4.02e-01 100.0% 42.5%
3989094 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 49.0 4.81e-01 100.0% 72.9%
3410365 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.66 49.0 3.01e-01 100.0% 13.4%
3810942 4030.1.1.10 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › PPR 0.65 40.0 4.04e-01 95.3% 61.5%
2890670 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.65 46.0 3.61e-01 85.9% 34.5%
3191420 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 50.0 5.06e-01 100.0% 83.1%
3721200 611.9.1.5 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › SesA 0.61 56.0 4.39e-01 100.0% 97.7%
4329615 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.61 51.0 4.94e-01 100.0% 81.4%
4543996 3600.1.1.1 alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD 0.60 49.0 4.07e-01 100.0% 52.4%
3192372 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.60 47.0 4.20e-01 100.0% 60.0%
5030996 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.06e-01 93.8% 61.7%
3486497 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 51.0 3.97e-01 92.2% 65.4%
3782284 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 48.0 3.45e-01 96.9% 30.5%
4937556 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.58 48.0 5.01e-01 92.2% 96.7%
3936929 5057.1.1.13 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus 0.58 51.0 3.93e-01 100.0% 86.0%
3233589 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 51.0 4.85e-01 100.0% 81.3%
3887886 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.57 51.0 3.42e-01 98.4% 25.7%
3729994 3755.3.1.284 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Utp11 0.57 51.0 3.92e-01 100.0% 46.9%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.57 50.0 5.03e-01 100.0% 93.8%
3714244 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.56 46.0 4.73e-01 93.8% 91.7%
3238213 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 51.0 4.23e-01 100.0% 65.5%
3462297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.66e-01 100.0% 81.3%
4993195 632.6.1.15 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 0.55 47.0 4.07e-01 92.2% 91.6%
3775580 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.54 49.0 4.65e-01 98.4% 100.0%
4188764 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.52 46.0 3.71e-01 98.4% 68.3%