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OP131587.1__UYL85419.1__gp17__00017

Bact-Vir

OP131587.1__UYL85419.1__gp17__00017

Identity

Accession:
OP131587 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-39
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.68 47.0 4.78e-01 83.3% 76.5%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 52.0 5.00e-01 100.0% 81.0%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.63 46.0 3.54e-01 88.9% 32.3%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 52.0 3.63e-01 100.0% 28.7%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 48.0 3.31e-01 97.2% 53.8%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 40.0 2.56e-01 100.0% 12.8%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.60 47.0 4.03e-01 100.0% 53.2%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 46.0 3.14e-01 91.7% 59.6%
3nw0A03 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 40.0 3.58e-01 75.0% 70.7%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.55 45.0 3.89e-01 100.0% 71.0%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 2.68e-01 86.1% 93.6%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 3.10e-01 88.9% 42.4%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 43.0 3.08e-01 100.0% 30.8%
2hoxA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 40.0 3.00e-01 91.7% 73.5%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.53 45.0 2.98e-01 100.0% 68.2%
1ei6A01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.52 43.0 2.59e-01 100.0% 17.1%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 2.65e-01 100.0% 79.1%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 38.0 3.45e-01 88.9% 57.7%
3dteA01 1.10.10.2910 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 45.0 3.10e-01 100.0% 92.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503411 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 50.0 4.72e-01 80.6% 68.9%
3735848 109.4.1.1553 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.67 46.0 2.43e-01 100.0% 2.8%
3477115 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 50.0 4.29e-01 86.1% 61.7%
3882503 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.63 43.0 4.39e-01 83.3% 77.1%
3508769 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 41.0 4.14e-01 72.2% 68.6%
3400885 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 43.0 4.33e-01 91.7% 80.0%
3245636 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 52.0 4.56e-01 100.0% 81.8%
4970593 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.59 42.0 2.56e-01 100.0% 11.2%
3581477 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 41.0 3.92e-01 75.0% 64.4%
4979039 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.58 45.0 2.77e-01 100.0% 14.4%
3658440 386.1.1.26 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.58 39.0 3.43e-01 77.8% 45.5%
3176583 7515.1.1.6 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.58 43.0 2.53e-01 100.0% 8.4%
3595905 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 43.0 3.01e-01 100.0% 23.0%
3744636 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.57 44.0 3.41e-01 88.9% 70.0%
4152427 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 40.0 3.36e-01 77.8% 42.9%
5011867 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 40.0 2.66e-01 88.9% 17.9%
3514931 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 3.87e-01 77.8% 57.5%
3856983 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 38.0 4.08e-01 88.9% 86.7%
5051266 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 43.0 2.61e-01 100.0% 13.8%
3498926 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 37.0 3.76e-01 75.0% 65.7%
3906295 7579.1.1.38 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › BAAT_C 0.54 41.0 2.52e-01 97.2% 58.3%
3770164 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 43.0 3.31e-01 88.9% 37.6%
3780096 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 36.0 3.00e-01 80.6% 38.5%
3512253 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 38.0 3.63e-01 75.0% 52.3%
3718581 386.1.1.114 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C3HC4_2 0.53 39.0 2.89e-01 100.0% 28.2%
4021842 109.4.1.1553 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.53 41.0 2.21e-01 94.4% 7.3%
5031515 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 44.0 3.38e-01 100.0% 84.2%
3348160 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 40.0 3.75e-01 88.9% 62.5%
3362641 376.1.3.57 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_ULT1 0.52 37.0 3.17e-01 75.0% 70.0%
3605785 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 2.75e-01 100.0% 19.2%
3368067 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.52 41.0 2.45e-01 100.0% 15.1%
3245696 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.52 36.0 2.32e-01 94.4% 30.2%
3600192 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 40.0 2.23e-01 86.1% 54.8%
5056127 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 45.0 2.50e-01 100.0% 46.1%
3720343 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.52 38.0 3.04e-01 86.1% 52.9%
3319227 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.51 40.0 3.41e-01 97.2% 50.0%
5006819 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 40.0 2.99e-01 100.0% 33.7%
5057901 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.50 38.0 3.46e-01 100.0% 60.0%
3744005 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 42.0 2.64e-01 100.0% 18.4%
D2 high residues 56-126
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gykB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.66 49.0 3.75e-01 100.0% 32.9%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.64 42.0 4.26e-01 80.3% 67.1%
3l9vC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 48.0 3.63e-01 97.2% 32.6%
3c7mA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 53.0 3.90e-01 97.2% 38.5%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 52.0 5.10e-01 100.0% 88.3%
6s8bA01 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.62 45.0 3.66e-01 80.3% 91.2%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 47.0 4.89e-01 93.0% 93.9%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 43.0 4.46e-01 97.2% 81.8%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 50.0 4.40e-01 100.0% 93.0%
1a1wA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 49.0 4.79e-01 98.6% 97.6%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 49.0 4.60e-01 100.0% 87.1%
1sxjC02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 37.0 3.82e-01 85.9% 68.1%
1f7cA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.58 44.0 3.34e-01 84.5% 43.4%
2zcaA00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.57 42.0 3.44e-01 83.1% 69.0%
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.55 44.0 3.40e-01 91.5% 79.7%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 37.0 4.09e-01 77.5% 94.5%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 43.0 3.95e-01 97.2% 98.1%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.53 43.0 3.51e-01 94.4% 89.3%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.53 40.0 3.33e-01 83.1% 96.9%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 41.0 3.46e-01 93.0% 48.1%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.52 44.0 3.54e-01 100.0% 91.7%
3kezA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 38.0 3.32e-01 80.3% 59.0%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.51 43.0 3.90e-01 97.2% 80.6%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.51 38.0 3.91e-01 83.1% 95.5%
5e9hB01 1.10.10.850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 42.0 3.79e-01 100.0% 99.1%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 38.0 3.96e-01 100.0% 89.6%
2d5vA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 40.0 3.91e-01 88.7% 82.3%
3dkaB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 37.0 3.15e-01 83.1% 93.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2392399 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 52.0 5.29e-01 100.0% 94.4%
3931056 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.62 52.0 4.65e-01 98.6% 95.2%
3846043 219.1.1.15 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.61 50.0 3.31e-01 97.2% 40.9%
4009630 162.1.1.5 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PF30457 0.57 39.0 3.52e-01 91.5% 51.0%
3282093 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 47.0 4.35e-01 98.6% 80.0%
4145392 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.56 38.0 2.74e-01 70.4% 54.0%
4118192 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 47.0 3.36e-01 100.0% 32.5%
3546822 110.1.1.17 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CC4_RECK 0.53 42.0 4.41e-01 87.3% 100.0%
5003376 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 36.0 3.45e-01 71.8% 74.4%
4966837 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.53 36.0 3.50e-01 73.2% 69.4%
3646945 109.2.1.7 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.51 39.0 2.91e-01 83.1% 99.5%
3666204 2002.1.1.64 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 0.51 42.0 2.62e-01 94.4% 26.5%
3270980 189.1.1.2 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.50 43.0 3.19e-01 98.6% 71.5%