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OP131589.1__UYL85463.1__gp08c__00008
Bact-VirOP131589.1__UYL85463.1__gp08c__00008
Identity
- Accession:
- OP131589 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-54
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fdaA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 52.0 | 3.43e-01 | 100.0% | 44.4% |
| 1xm7A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.61 | 50.0 | 3.46e-01 | 100.0% | 25.8% |
| 4qbnA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 47.0 | 3.95e-01 | 100.0% | 48.4% |
| 1zbqA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 49.0 | 3.26e-01 | 100.0% | 39.3% |
| 3vwaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.59 | 42.0 | 3.16e-01 | 79.6% | 65.0% |
| 2dxnA02 | 3.30.750.180 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › GpdQ, beta-strand dimerisation domain | 0.59 | 48.0 | 3.74e-01 | 100.0% | 57.9% |
| 2g5xA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 42.0 | 2.91e-01 | 89.8% | 23.3% |
| 3gffA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 45.0 | 2.84e-01 | 100.0% | 29.1% |
| 1vbkA02 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.55 | 48.0 | 4.08e-01 | 100.0% | 65.9% |
| 4fnfA00 | 2.40.50.50 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 38.0 | 3.12e-01 | 89.8% | 36.7% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.54 | 41.0 | 3.07e-01 | 89.8% | 94.6% |
| 2e52B01 | 3.40.91.70 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII | 0.54 | 45.0 | 2.97e-01 | 98.0% | 74.1% |
| 3hynA00 | 3.40.50.11200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 2.90e-01 | 89.8% | 94.1% |
| 4i1sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.44e-01 | 100.0% | 49.1% |
| 3pbkA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.53 | 46.0 | 3.55e-01 | 100.0% | 44.4% |
| 3regA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 3.03e-01 | 98.0% | 62.0% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 44.0 | 3.54e-01 | 100.0% | 56.7% |
| 3zyvC06 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.52 | 40.0 | 2.64e-01 | 91.8% | 67.7% |
| 5v07Z01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 43.0 | 2.91e-01 | 100.0% | 57.3% |
| 1wteA02 | 3.40.1560.10 | Alpha Beta › 3-Layer(aba) Sandwich › type ii restriction endonuclease, domain 2 › type ii restriction endonuclease, domain 2 | 0.52 | 44.0 | 3.33e-01 | 100.0% | 41.1% |
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.19e-01 | 100.0% | 40.3% |
| 3r3pB00 | 3.40.960.10 | Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease | 0.51 | 42.0 | 3.50e-01 | 98.0% | 55.1% |
| 4pv6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 44.0 | 3.13e-01 | 100.0% | 57.1% |
| 5eccA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.51 | 38.0 | 2.75e-01 | 85.7% | 63.1% |
| 1r0sA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.17e-01 | 98.0% | 76.5% |
| 3fwyA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 2.74e-01 | 100.0% | 64.2% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.22e-01 | 83.7% | 47.7% |
| 2csuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 42.0 | 3.21e-01 | 95.9% | 89.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973286 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.72 | 58.0 | 3.88e-01 | 91.8% | 22.6% |
| 5024392 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.68 | 49.0 | 3.05e-01 | 79.6% | 23.3% |
| 3741383 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.62 | 52.0 | 3.31e-01 | 100.0% | 21.5% |
| 3220763 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.62 | 52.0 | 3.86e-01 | 100.0% | 35.6% |
| 7872 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.61 | 50.0 | 3.46e-01 | 100.0% | 25.8% |
| 4882437 | 2003.1.6.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin | 0.61 | 53.0 | 3.41e-01 | 100.0% | 78.9% |
| 3282934 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.61 | 50.0 | 3.25e-01 | 100.0% | 19.3% |
| 3226464 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.60 | 50.0 | 3.72e-01 | 100.0% | 35.6% |
| 5071682 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 48.0 | 3.50e-01 | 91.8% | 42.9% |
| 3320834 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.57 | 47.0 | 3.42e-01 | 100.0% | 42.6% |
| 3613966 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.57 | 40.0 | 3.43e-01 | 93.9% | 43.3% |
| 4946783 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.56 | 49.0 | 2.96e-01 | 100.0% | 89.2% |
| 3285366 | 232.1.1.4 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph | 0.55 | 45.0 | 2.83e-01 | 100.0% | 36.4% |
| 3268368 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.55 | 44.0 | 2.63e-01 | 91.8% | 19.8% |
| 4025570 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.55 | 37.0 | 2.76e-01 | 71.4% | 76.9% |
| 5036987 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.55 | 47.0 | 4.21e-01 | 98.0% | 71.4% |
| 3399114 | 2008.1.1.80 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2 | 0.54 | 44.0 | 3.45e-01 | 100.0% | 51.2% |
| 3576630 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.54 | 44.0 | 2.83e-01 | 100.0% | 19.6% |
| 2721398 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.54 | 47.0 | 3.47e-01 | 100.0% | 39.5% |
| None | — | 0.53 | 46.0 | 2.96e-01 | 100.0% | 66.4% | |
| 3182553 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.52 | 46.0 | 3.58e-01 | 100.0% | 47.2% |
| 3968423 | 7503.1.1.12 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4823 | 0.52 | 42.0 | 3.02e-01 | 93.9% | 29.0% |
| 3640449 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 44.0 | 3.20e-01 | 100.0% | 37.9% |
| 5049899 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 44.0 | 2.91e-01 | 100.0% | 23.4% |
| 4494002 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.51 | 42.0 | 3.32e-01 | 100.0% | 90.8% |
| 1282261 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.51 | 42.0 | 3.51e-01 | 98.0% | 55.7% |
| 4024691 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.51 | 43.0 | 3.52e-01 | 100.0% | 75.0% |
| 3942647 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.51 | 40.0 | 2.72e-01 | 87.8% | 36.8% |
| 5079503 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 43.0 | 2.99e-01 | 100.0% | 45.9% |
D2
medium
residues 60-101
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1juqC00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.84 | 67.0 | 4.58e-01 | 90.5% | 26.2% |
| 1kqfC00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.72 | 63.0 | 3.98e-01 | 100.0% | 47.7% |
| 3urgA01 | 6.10.140.400 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 45.0 | 4.02e-01 | 92.9% | 48.3% |
| 2qhaA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 54.0 | 3.20e-01 | 100.0% | 30.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3925907 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.80 | 64.0 | 4.28e-01 | 92.9% | 48.5% |
| 3966677 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 63.0 | 3.88e-01 | 100.0% | 25.7% |