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OP131589.1__UYL85491.1__gp36__00036

Bact-Vir

OP131589.1__UYL85491.1__gp36__00036

Identity

Accession:
OP131589 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 114-172
PDB
D2 high residues 183-259
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.78 50.0 4.75e-01 80.5% 56.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 47.0 3.80e-01 70.1% 73.4%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.65 49.0 4.38e-01 80.5% 57.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.64 49.0 4.93e-01 81.8% 79.7%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.63 49.0 3.69e-01 85.7% 33.9%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.57e-01 97.4% 27.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.62 55.0 4.89e-01 100.0% 78.9%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 49.0 4.11e-01 88.3% 89.9%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 48.0 4.17e-01 85.7% 96.7%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 55.0 3.60e-01 100.0% 31.7%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 4.18e-01 85.7% 55.8%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 4.10e-01 87.0% 81.2%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 48.0 3.84e-01 87.0% 97.4%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.60 53.0 3.41e-01 100.0% 41.5%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.60 51.0 3.72e-01 100.0% 38.1%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 48.0 4.12e-01 88.3% 97.6%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 51.0 3.42e-01 96.1% 30.7%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 47.0 4.07e-01 88.3% 96.0%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.26e-01 100.0% 66.9%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.09e-01 100.0% 65.4%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.61e-01 100.0% 86.0%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.58 50.0 3.17e-01 100.0% 33.5%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 48.0 3.49e-01 93.5% 60.8%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.13e-01 93.5% 60.5%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 3.89e-01 100.0% 46.0%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 3.51e-01 81.8% 98.7%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.57 46.0 3.78e-01 89.6% 53.8%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 50.0 4.29e-01 100.0% 95.9%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 48.0 3.92e-01 94.8% 70.9%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 49.0 4.24e-01 100.0% 88.3%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.55 49.0 3.22e-01 100.0% 25.4%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.26e-01 89.6% 95.4%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.84e-01 94.8% 72.2%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 47.0 3.11e-01 100.0% 24.6%
1ff9A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 41.0 3.19e-01 89.6% 97.8%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.24e-01 83.1% 52.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974649 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.77 70.0 6.67e-01 100.0% 85.6%
3188230 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 50.0 3.29e-01 94.8% 18.0%
4978331 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.71 46.0 4.79e-01 92.2% 72.9%
3881962 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.69 50.0 3.75e-01 83.1% 31.9%
3291057 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 53.0 5.55e-01 85.7% 100.0%
4274290 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 59.0 3.94e-01 100.0% 47.9%
3217981 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 40.0 3.07e-01 96.1% 28.2%
3286878 9.1.1.11 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.64 48.0 3.86e-01 84.4% 44.6%
1949063 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.63 51.0 4.64e-01 87.0% 96.0%
4965513 331.19.1.5 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › DUF5784 0.63 43.0 3.87e-01 97.4% 51.4%
3805804 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 47.0 4.61e-01 81.8% 72.9%
3604446 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.62 49.0 2.87e-01 84.4% 19.4%
3628642 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.53e-01 100.0% 41.6%
3778085 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.38e-01 97.4% 21.7%
3853086 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.50e-01 97.4% 26.0%
4142345 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 55.0 3.55e-01 100.0% 47.6%
4486741 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 54.0 3.51e-01 100.0% 41.3%
3974499 2487.1.1.3 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.61 49.0 3.39e-01 88.3% 79.2%
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 46.0 4.58e-01 81.8% 88.7%
3562858 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 52.0 3.26e-01 100.0% 27.3%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.38e-01 100.0% 22.9%
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 41.0 4.26e-01 84.4% 80.0%
3407108 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 52.0 3.35e-01 100.0% 38.6%
3831748 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.58 49.0 4.13e-01 94.8% 87.4%
4984958 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.58 45.0 2.94e-01 84.4% 30.6%
3181119 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 52.0 3.21e-01 100.0% 29.0%
3739225 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 50.0 3.19e-01 97.4% 25.1%
3833469 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 2.92e-01 100.0% 11.6%
4956931 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 44.0 2.68e-01 84.4% 20.8%
3660221 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.57 47.0 3.84e-01 96.1% 76.6%
None 0.56 46.0 3.63e-01 92.2% 54.4%
5047049 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 44.0 2.59e-01 84.4% 18.7%
3810743 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 49.0 3.48e-01 100.0% 34.3%
3335974 3304.1.1.2 a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.55 46.0 3.84e-01 93.5% 70.7%
3375268 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.55 49.0 3.56e-01 100.0% 93.6%
4021395 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.86e-01 87.0% 26.5%
3821765 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 47.0 3.17e-01 100.0% 39.1%
3261529 5.1.5.27 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.54 48.0 3.04e-01 100.0% 26.4%
3238631 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.53 45.0 3.09e-01 92.2% 32.7%
3823559 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 45.0 3.05e-01 100.0% 24.7%
3228776 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 44.0 3.00e-01 93.5% 28.5%
3888357 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 46.0 3.14e-01 100.0% 28.6%
5009577 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 44.0 3.81e-01 98.7% 61.6%
3506274 331.2.1.7 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung 0.51 40.0 3.53e-01 89.6% 58.4%
3502939 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 41.0 3.94e-01 93.5% 76.7%
D3 high residues 268-361
PDB
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dcyA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.56 50.0 3.70e-01 100.0% 75.3%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 3.44e-01 96.8% 57.5%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 43.0 3.07e-01 88.3% 73.1%
2hb0A01 2.60.40.2520 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, adhesin domain 0.53 37.0 3.07e-01 72.3% 84.7%
3i6sA04 2.60.40.2310 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.80e-01 80.9% 75.5%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.51 44.0 3.34e-01 100.0% 71.7%
4pzaB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 44.0 3.47e-01 100.0% 75.6%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.18e-01 100.0% 57.7%
2e7mA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 32.0 3.10e-01 86.2% 56.3%
3dc4A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 38.0 2.81e-01 84.0% 81.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4586611 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.58 45.0 3.57e-01 84.0% 66.2%
3341364 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.56 45.0 4.06e-01 87.2% 99.2%
145743 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 35.0 3.47e-01 86.2% 61.9%
3552630 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 45.0 3.90e-01 96.8% 85.8%
3886066 11.1.1.588 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C 0.53 35.0 3.18e-01 80.9% 50.4%
3332928 11.1.1.863 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_VIN3 0.52 33.0 3.35e-01 79.8% 63.2%
3417014 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.94e-01 88.3% 86.8%
4023675 3156.3.1.0 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.52 38.0 3.52e-01 76.6% 82.5%
3228785 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.52 43.0 3.61e-01 94.7% 81.7%
3356732 2.1.1.67 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.52 41.0 3.85e-01 88.3% 75.8%
3928536 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 35.0 3.76e-01 72.3% 98.8%
3903604 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.25e-01 70.2% 84.2%
3217924 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 42.0 3.46e-01 93.6% 76.8%
3215304 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.75e-01 78.7% 78.9%
3912942 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 32.0 3.32e-01 81.9% 66.7%
D4 medium residues 1-113
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qu7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.76 69.0 5.40e-01 97.3% 52.0%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.71 63.0 4.75e-01 95.6% 41.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3619082 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.79 72.0 5.08e-01 98.2% 43.1%
3586751 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.78 71.0 6.05e-01 100.0% 74.4%
3652229 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.75 64.0 4.53e-01 99.1% 32.6%
3241365 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 53.0 4.60e-01 77.9% 51.9%