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OP172633.1__WAX05116.1__AB434P2_00043__00038

Bact-Vir

OP172633.1__WAX05116.1__AB434P2_00043__00038

Identity

Accession:
OP172633 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Agathobaculum_phage_AB434P2

TaxID: 2968527

Cluster

View cluster (116 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-94
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF23982.3 XM1_gp53_minor_capsid 35.1 1.60e-08 100.0% 40.3%
PF22758.3 best Phage_cement 38.6 1.60e-09 100.0% 50.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.77 57.0 5.32e-01 97.4% 64.2%
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.77 57.0 5.32e-01 89.7% 64.5%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.68 55.0 5.72e-01 91.0% 94.4%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.64 53.0 5.41e-01 88.5% 100.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 54.0 5.52e-01 96.2% 97.4%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 46.0 4.21e-01 93.6% 61.4%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.61 51.0 4.30e-01 91.0% 56.1%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 4.04e-01 94.9% 62.2%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 43.0 4.01e-01 96.2% 61.0%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.59 38.0 3.82e-01 93.6% 65.4%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.52 23.0 3.05e-01 71.8% 78.0%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.52 41.0 3.45e-01 91.0% 74.0%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.51 35.0 3.23e-01 96.2% 51.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.86 56.0 6.41e-01 89.7% 88.1%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 64.0 6.79e-01 91.0% 94.3%
3981037 70.4.1.9 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.79 54.0 6.29e-01 89.7% 100.0%
5022524 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.79 55.0 5.86e-01 92.3% 81.4%
2526359 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.77 54.0 6.00e-01 92.3% 95.0%
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.77 60.0 5.45e-01 96.2% 64.0%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 53.0 6.06e-01 88.5% 96.6%
3945288 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.75 66.0 5.26e-01 93.6% 51.4%
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.70 56.0 4.98e-01 100.0% 61.5%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.70 50.0 5.64e-01 91.0% 98.3%
5083817 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.70 55.0 5.91e-01 88.5% 100.0%
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.70 49.0 5.44e-01 87.2% 95.0%
3820836 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.67 44.0 4.35e-01 94.9% 62.4%
5075574 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 56.0 5.64e-01 91.0% 93.8%
1176867 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 56.0 5.30e-01 93.6% 86.8%
364260 70.4.1.3 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 0.60 51.0 3.92e-01 91.0% 66.9%
3794026 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.53 33.0 3.23e-01 97.4% 57.6%
2841990 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.51 33.0 3.55e-01 97.4% 78.5%
D2 high residues 97-163
PDB
Domain cluster: rep: CAKLQH020000012.1__CAH1086588.1__SAMEA5780036_01984__00028__D92-158
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x7fA02 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.57 49.0 4.18e-01 100.0% 96.6%
2p0oA02 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.57 49.0 4.14e-01 100.0% 87.4%
1qdlB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 36.0 2.69e-01 70.1% 71.3%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.53 47.0 4.63e-01 100.0% 100.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986892 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.89 84.0 8.05e-01 100.0% 92.0%
3945288 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.86 79.0 6.00e-01 100.0% 45.8%
5083719 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.58 52.0 4.23e-01 100.0% 55.2%
2984229 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.53 47.0 4.51e-01 100.0% 91.0%
None — 0.51 30.0 2.32e-01 100.0% 22.9%