Back to structures

OP172638.1__WAX05398.1__AD70P2_00010__00010

Bact-Vir

OP172638.1__WAX05398.1__AD70P2_00010__00010

Identity

Accession:
OP172638 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 55.0 5.59e-01 76.5% 67.6%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 58.0 5.34e-01 76.5% 66.7%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 48.0 4.73e-01 73.5% 60.3%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 49.0 4.91e-01 76.5% 65.2%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 50.0 5.09e-01 80.9% 72.7%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 48.0 4.62e-01 76.5% 59.5%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 48.0 4.94e-01 80.9% 71.2%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 49.0 4.97e-01 85.3% 77.3%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.68 47.0 4.49e-01 95.6% 61.7%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.66 52.0 4.87e-01 85.3% 72.3%
2erbA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 50.0 4.37e-01 86.8% 96.3%
3rfwA02 6.10.140.970 Special › Helix non-globular › Helix Hairpins › 0.64 44.0 4.13e-01 72.1% 61.4%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 45.0 4.33e-01 77.9% 66.2%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 43.0 3.93e-01 73.5% 88.3%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.61 49.0 4.25e-01 86.8% 100.0%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 43.0 4.75e-01 100.0% 98.1%
3stoA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.59 51.0 3.63e-01 100.0% 37.9%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 43.0 4.27e-01 83.8% 74.0%
6vhyA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 46.0 4.65e-01 88.2% 88.2%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 43.0 4.61e-01 98.5% 96.5%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 3.94e-01 100.0% 63.0%
1npyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 3.27e-01 79.4% 100.0%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 46.0 4.52e-01 88.2% 83.8%
3gwnA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.57 45.0 3.77e-01 83.8% 77.9%
2jo7A00 1.10.4170.10 Mainly Alpha › Orthogonal Bundle › Glycosylphosphatidylinositol-anchored merozoite surface protein › Glycosylphosphatidylinositol-anchored merozoite surface protein 0.57 48.0 3.39e-01 95.6% 64.3%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.56 45.0 4.31e-01 100.0% 74.4%
4mdvB03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.56 34.0 3.09e-01 91.2% 45.1%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.56 42.0 3.65e-01 80.9% 84.0%
3fiwA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 4.03e-01 98.5% 77.8%
1k74D00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 47.0 3.24e-01 100.0% 47.4%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.55 46.0 4.18e-01 100.0% 98.0%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.54 37.0 3.40e-01 75.0% 50.0%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 35.0 3.96e-01 89.7% 90.2%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.53 37.0 3.84e-01 97.1% 75.8%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 46.0 4.49e-01 100.0% 96.0%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 40.0 4.24e-01 100.0% 90.2%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 45.0 3.15e-01 100.0% 68.7%
1ds8M02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.52 43.0 3.41e-01 100.0% 41.8%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 2.96e-01 95.6% 98.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.52 38.0 3.55e-01 97.1% 59.6%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 45.0 3.84e-01 97.1% 85.3%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.51 35.0 2.99e-01 76.5% 40.3%
1dk5A02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.51 35.0 3.43e-01 89.7% 66.7%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 43.0 3.39e-01 97.1% 77.1%
5v07Z02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 41.0 3.98e-01 100.0% 80.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1510513 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.84 55.0 4.69e-01 76.5% 43.0%
3442297 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.81 68.0 6.28e-01 98.5% 72.6%
3367461 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.80 67.0 5.40e-01 98.5% 48.8%
3467577 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 66.0 5.41e-01 98.5% 50.8%
3421598 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 66.0 5.32e-01 98.5% 48.8%
3367703 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 66.0 5.32e-01 98.5% 48.8%
3379716 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 66.0 5.31e-01 98.5% 48.8%
3296786 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 66.0 5.37e-01 98.5% 50.8%
3311239 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.79 66.0 5.30e-01 98.5% 48.8%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.79 47.0 4.84e-01 86.8% 63.1%
3664835 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.78 65.0 5.26e-01 98.5% 48.8%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 49.0 5.35e-01 89.7% 78.2%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.78 47.0 4.81e-01 86.8% 63.1%
3312431 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.78 69.0 5.49e-01 100.0% 51.2%
3448615 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.77 65.0 5.73e-01 98.5% 63.0%
3426912 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.77 62.0 5.90e-01 95.6% 73.8%
3334694 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.77 64.0 5.91e-01 98.5% 71.8%
5066994 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.75 54.0 5.13e-01 76.5% 63.7%
3985012 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 49.0 4.81e-01 76.5% 61.3%
3455132 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.75 61.0 5.00e-01 98.5% 50.0%
3235659 101.1.1.102 alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.75 56.0 5.78e-01 92.6% 84.6%
3288293 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 50.0 5.43e-01 75.0% 85.5%
4029825 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.74 54.0 5.07e-01 98.5% 63.1%
3661501 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.72 57.0 5.46e-01 95.6% 73.8%
3597198 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 4.58e-01 100.0% 54.7%
3738343 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.69 45.0 4.79e-01 94.1% 76.7%
3504389 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 45.0 4.28e-01 89.7% 57.5%
3619546 3712.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.68 48.0 4.93e-01 83.8% 78.5%
3782428 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 48.0 3.98e-01 91.2% 42.5%
3405944 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.67 45.0 4.39e-01 79.4% 62.7%
3589265 101.1.2.145 alpha arrays › HTH › HTH › winged helix domain › HHH_4 0.66 49.0 4.54e-01 91.2% 61.1%
3987997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 4.80e-01 91.2% 73.3%
5025312 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.66 51.0 3.20e-01 83.8% 27.2%
143247 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.65 46.0 4.33e-01 95.6% 61.0%
5045196 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.64 50.0 3.11e-01 83.8% 25.5%
4507743 2003.1.1.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.64 50.0 3.69e-01 85.3% 97.3%
3437796 101.1.11.136 alpha arrays › HTH › HTH › Ribbon-helix-helix › PF30992 0.64 41.0 4.60e-01 83.8% 88.0%
3940471 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.54e-01 91.2% 65.9%
3959794 132.1.1.0 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.63 50.0 4.42e-01 86.8% 61.0%
3439039 101.1.1.66 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.63 54.0 4.41e-01 98.5% 50.0%
4933924 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 4.56e-01 91.2% 83.3%
3248928 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.62 47.0 5.16e-01 95.6% 100.0%
3831185 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 44.0 4.43e-01 80.9% 72.9%
3437512 5050.1.1.1 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.61 50.0 3.28e-01 92.6% 20.7%
3943441 101.1.4.2 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.61 40.0 4.56e-01 85.3% 92.0%
4980819 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.60 41.0 4.20e-01 97.1% 75.4%
3294636 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 45.0 3.78e-01 100.0% 47.8%
3816142 161.1.1.12 alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › zf-RVT 0.60 50.0 3.95e-01 95.6% 91.3%
5022298 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.59 42.0 4.10e-01 75.0% 70.7%
4256310 589.1.1.2 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 0.58 40.0 2.92e-01 73.5% 30.0%
3502321 103.1.1.86 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28543 0.58 39.0 3.97e-01 70.6% 72.3%
3491635 132.1.1.2 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › Ribosomal_L50 0.57 44.0 3.80e-01 83.8% 54.5%
3167725 101.1.15.3 alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung 0.56 46.0 4.10e-01 97.1% 100.0%
3588719 564.1.1.0 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.55 39.0 4.03e-01 100.0% 76.9%
4998613 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.55 43.0 3.93e-01 91.2% 83.0%
3934456 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.55 33.0 3.34e-01 92.6% 60.0%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.55 46.0 4.40e-01 94.1% 78.8%
3785340 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.54 46.0 2.66e-01 100.0% 45.9%
4520559 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.54 47.0 4.43e-01 100.0% 89.4%
3597591 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.53 38.0 3.77e-01 95.6% 71.4%
4136321 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.53 43.0 4.42e-01 97.1% 93.8%
3419204 109.4.1.1282 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.52 41.0 2.56e-01 85.3% 20.0%
3976839 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.52 43.0 3.89e-01 95.6% 90.0%
3611632 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.52 41.0 3.57e-01 100.0% 57.0%
3784891 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.51 44.0 3.53e-01 98.5% 86.4%