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OP172642.1__WAX05562.1__BA746P1_00041__00041

Bact-Vir

OP172642.1__WAX05562.1__BA746P1_00041__00041

Identity

Accession:
OP172642 ↗
Kingdom:
phage

Quality

96.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bifidobacterium_phage_BA746P1

TaxID: 2968611

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-91_145-166
PDB
Domain cluster: rep: CAKLQF020000012.1__CAH1086445.1__SAMEA5780031_02396__00062__D1-91_177-204
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13230.12 best GATase_4 27.1 2.70e-06 70.8% 25.3%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.80 73.0 5.71e-01 98.2% 88.5%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.78 71.0 5.44e-01 97.3% 81.9%
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.76 70.0 4.97e-01 99.1% 81.6%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 67.0 4.87e-01 99.1% 80.7%
1te5A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.71 64.0 4.87e-01 98.2% 90.9%
2ip4A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.68 40.0 4.98e-01 73.5% 100.0%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.67 44.0 4.30e-01 71.7% 62.0%
5i47B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 39.0 4.77e-01 74.3% 100.0%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 38.0 4.71e-01 72.6% 100.0%
4mamA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 38.0 4.33e-01 72.6% 80.2%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.64 45.0 4.20e-01 78.8% 58.3%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 39.0 4.66e-01 72.6% 98.5%
1dikA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 40.0 3.66e-01 72.6% 77.1%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 3.73e-01 92.9% 60.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 39.0 4.27e-01 73.5% 88.0%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 32.0 3.60e-01 95.6% 75.9%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 41.0 4.33e-01 92.9% 91.9%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.53 33.0 3.87e-01 75.2% 92.1%
2e44A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 33.0 3.84e-01 93.8% 93.3%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 39.0 3.20e-01 78.8% 78.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 39.0 3.40e-01 77.9% 82.0%
1x4gA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 3.86e-01 77.0% 91.7%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 31.0 3.59e-01 95.6% 85.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995664 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.84 78.0 5.75e-01 100.0% 86.2%
5012635 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.83 77.0 5.74e-01 99.1% 88.3%
4960069 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.82 75.0 5.80e-01 97.3% 88.7%
3942872 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.82 76.0 5.70e-01 99.1% 91.0%
5027271 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.82 74.0 5.58e-01 96.5% 90.0%
3965213 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.81 76.0 5.58e-01 100.0% 97.1%
5081419 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.81 74.0 5.45e-01 97.3% 90.0%
5054721 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.81 73.0 5.63e-01 97.3% 86.7%
3782814 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.81 75.0 5.38e-01 99.1% 90.1%
4012892 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.81 74.0 5.14e-01 98.2% 99.4%
5077548 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.80 74.0 5.39e-01 100.0% 85.8%
3685838 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.80 74.0 5.18e-01 99.1% 84.2%
4944470 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.80 74.0 5.64e-01 99.1% 89.4%
3273426 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.80 74.0 5.48e-01 99.1% 89.6%
4971386 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.80 74.0 5.33e-01 100.0% 87.9%
None — 0.80 73.0 5.64e-01 99.1% 82.9%
5001463 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.80 74.0 5.36e-01 100.0% 87.8%
4680317 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.80 74.0 5.69e-01 99.1% 83.4%
4321843 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.79 74.0 5.76e-01 99.1% 89.8%
None — 0.79 72.0 5.58e-01 98.2% 83.0%
None — 0.79 73.0 5.58e-01 99.1% 85.0%
3963821 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.79 74.0 5.56e-01 100.0% 98.8%
4259223 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.79 73.0 5.62e-01 99.1% 83.4%
4940798 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 73.0 5.53e-01 99.1% 99.6%
3690304 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.78 72.0 5.27e-01 99.1% 90.8%
5046400 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.78 73.0 5.38e-01 99.1% 91.7%
4945633 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 72.0 5.61e-01 99.1% 84.8%
4994995 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 71.0 5.50e-01 98.2% 85.1%
3532427 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 72.0 5.38e-01 99.1% 88.1%
4991572 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 71.0 5.50e-01 99.1% 87.1%
4147605 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 72.0 5.44e-01 99.1% 81.2%
3280543 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 71.0 5.42e-01 98.2% 85.7%
4149445 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.78 72.0 5.50e-01 100.0% 99.6%
4588679 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.77 72.0 5.47e-01 99.1% 84.5%
4947903 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 72.0 5.46e-01 99.1% 99.6%
4947599 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 72.0 5.46e-01 99.1% 83.7%
4976025 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.77 72.0 5.48e-01 100.0% 100.0%
None — 0.77 71.0 5.47e-01 99.1% 85.0%
5075402 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.77 71.0 5.22e-01 100.0% 88.8%
4484517 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 71.0 5.38e-01 99.1% 80.4%
3963395 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 71.0 5.35e-01 99.1% 86.3%
5066749 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 70.0 5.40e-01 99.1% 86.1%
5071630 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 71.0 5.45e-01 99.1% 85.4%
None — 0.77 71.0 5.48e-01 99.1% 84.7%
3973007 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.77 71.0 5.37e-01 99.1% 84.4%
5024709 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.77 70.0 5.46e-01 97.3% 87.6%
5048308 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.76 70.0 5.52e-01 99.1% 84.9%
5052100 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.76 70.0 5.34e-01 99.1% 85.2%
5033976 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 69.0 5.30e-01 98.2% 85.0%
5032499 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 69.0 5.30e-01 99.1% 86.5%
3972522 210.1.3.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 0.74 66.0 4.76e-01 96.5% 82.5%
4981026 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.74 67.0 5.21e-01 99.1% 84.2%
3953557 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.72 66.0 4.96e-01 98.2% 89.6%
4976794 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.72 66.0 5.14e-01 99.1% 85.7%
5049285 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.70 64.0 5.04e-01 99.1% 84.3%
4986617 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.70 64.0 5.08e-01 99.1% 84.5%
4327532 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.70 48.0 4.75e-01 72.6% 66.7%
3960631 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.68 45.0 3.97e-01 73.5% 47.5%
5011710 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.64 45.0 4.22e-01 73.5% 60.0%
3980153 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.64 43.0 4.06e-01 72.6% 55.7%
4929079 821.1.1.15 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.62 43.0 4.65e-01 80.5% 87.2%
3594867 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 45.0 3.71e-01 80.5% 71.0%
3419007 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 43.0 4.37e-01 79.6% 86.1%
3594462 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 32.0 3.80e-01 95.6% 86.7%
5022263 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.51 43.0 4.43e-01 94.7% 96.4%
3936136 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 38.0 3.43e-01 90.3% 56.4%
D2 medium residues 92-144
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vrmA01 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.61 51.0 3.46e-01 100.0% 24.5%
5ul3A01 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.55 39.0 2.96e-01 100.0% 26.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3881656 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.55 37.0 3.33e-01 71.7% 81.3%
4942409 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.53 39.0 2.64e-01 79.2% 44.9%
4084031 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.52 38.0 2.63e-01 84.9% 71.4%