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OP172650.1__WAX05930.1__BC679P4_00026__00026

Bact-Vir

OP172650.1__WAX05930.1__BC679P4_00026__00026

Identity

Accession:
OP172650 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-52
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.76 66.0 4.33e-01 100.0% 69.3%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 64.0 5.07e-01 95.9% 46.9%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 62.0 6.12e-01 100.0% 94.3%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.68 55.0 4.86e-01 89.8% 66.2%
D2 high residues 54-102
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.76 67.0 4.77e-01 100.0% 34.3%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.69 47.0 3.48e-01 83.7% 28.7%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 58.0 4.29e-01 100.0% 41.9%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 56.0 4.42e-01 100.0% 48.1%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 46.0 2.95e-01 75.5% 65.0%
3m4rA01 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.64 52.0 3.56e-01 95.9% 89.1%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 53.0 4.27e-01 100.0% 47.1%
3dtyB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 42.0 2.90e-01 85.7% 18.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 52.0 3.93e-01 100.0% 38.5%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 42.0 4.36e-01 73.5% 93.5%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.60 42.0 2.62e-01 75.5% 35.4%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.39e-01 71.4% 41.7%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.59 48.0 4.42e-01 95.9% 85.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.59 47.0 4.07e-01 95.9% 56.2%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 45.0 2.77e-01 87.8% 20.6%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 40.0 3.98e-01 98.0% 70.4%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 4.13e-01 83.7% 81.8%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 37.0 2.37e-01 77.6% 12.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 46.0 3.58e-01 100.0% 41.5%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.56 46.0 3.27e-01 100.0% 92.3%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 47.0 3.27e-01 100.0% 59.2%
3vxvA00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.56 46.0 4.26e-01 95.9% 73.8%
3vr0A00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.55 46.0 3.02e-01 100.0% 75.0%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.55 39.0 3.53e-01 87.8% 53.5%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.42e-01 93.9% 50.0%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.89e-01 91.8% 65.2%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.55 42.0 3.16e-01 87.8% 35.5%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 39.0 2.38e-01 89.8% 11.4%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.27e-01 98.0% 46.1%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 42.0 2.69e-01 91.8% 24.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 44.0 3.97e-01 98.0% 66.2%
1mpxA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.81e-01 98.0% 19.9%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 2.93e-01 83.7% 30.7%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 45.0 3.03e-01 100.0% 43.7%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 41.0 3.41e-01 91.8% 70.6%
1hwyA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 43.0 3.06e-01 89.8% 37.6%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 39.0 3.60e-01 83.7% 57.1%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 39.0 2.86e-01 81.6% 64.3%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.69e-01 95.9% 39.5%
3unbF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 46.0 2.93e-01 100.0% 86.1%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 42.0 2.67e-01 100.0% 52.9%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 40.0 3.32e-01 98.0% 62.2%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.70e-01 98.0% 27.1%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.66e-01 98.0% 24.6%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 35.0 3.14e-01 75.5% 65.4%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 42.0 3.23e-01 100.0% 75.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4215069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 4.46e-01 100.0% 43.3%
3389626 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.72 63.0 5.54e-01 100.0% 66.7%
3237781 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 61.0 5.58e-01 100.0% 83.1%
5075488 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 43.0 3.88e-01 83.7% 45.6%
5029920 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.67 44.0 4.09e-01 89.8% 52.3%
5028523 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.65 43.0 3.95e-01 83.7% 50.8%
3373462 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.65 54.0 3.77e-01 93.9% 38.1%
5021591 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.64 55.0 3.60e-01 100.0% 76.9%
4943610 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 48.0 3.54e-01 89.8% 31.2%
3526919 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.64 48.0 4.01e-01 100.0% 44.2%
3281255 101.1.2.742 alpha arrays › HTH › HTH › winged helix domain › DUF7782 0.64 52.0 4.06e-01 100.0% 40.0%
4092770 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.20e-01 95.9% 46.0%
5077400 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 53.0 4.25e-01 98.0% 50.0%
4967355 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.63 41.0 3.77e-01 83.7% 50.8%
3928754 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.61 47.0 2.93e-01 85.7% 23.0%
4605764 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 47.0 3.88e-01 98.0% 45.3%
3247792 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 51.0 3.94e-01 100.0% 45.8%
3914347 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 51.0 3.80e-01 100.0% 37.0%
3301519 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.60 48.0 4.26e-01 95.9% 96.2%
4889666 11.2.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y 0.60 46.0 3.49e-01 83.7% 39.8%
4989812 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.60 48.0 4.59e-01 91.8% 76.7%
3486733 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.60 52.0 4.15e-01 98.0% 54.1%
4653150 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 47.0 3.70e-01 89.8% 58.2%
3990293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 44.0 4.28e-01 83.7% 70.9%
4492969 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.58 46.0 4.25e-01 89.8% 72.3%
3735697 330.1.1.19 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.58 42.0 3.65e-01 81.6% 48.8%
5079843 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 45.0 4.15e-01 87.8% 69.2%
3264331 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 46.0 3.59e-01 91.8% 51.8%
3492699 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 40.0 3.32e-01 75.5% 47.4%
3627627 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 47.0 3.47e-01 98.0% 36.6%
3508171 3392.1.1.1 a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › PAP_PilO 0.57 49.0 3.46e-01 100.0% 33.9%
3685219 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.40e-01 100.0% 33.8%
3290096 244.2.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.56 38.0 3.45e-01 73.5% 46.7%
4949301 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 50.0 3.62e-01 100.0% 57.8%
3251857 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 43.0 3.38e-01 98.0% 39.3%
11150 2484.1.1.36 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.56 47.0 3.27e-01 100.0% 59.6%
5058925 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.55 42.0 3.84e-01 87.8% 87.1%
3577821 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 42.0 2.74e-01 91.8% 35.3%
3689291 220.1.1.69 beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.54 45.0 3.30e-01 100.0% 43.9%
3658323 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.54 44.0 3.48e-01 91.8% 59.0%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 47.0 3.28e-01 100.0% 39.4%
3623902 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 41.0 2.84e-01 81.6% 72.5%
3705941 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 43.0 3.85e-01 100.0% 73.8%
4101190 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 42.0 3.74e-01 91.8% 76.0%
4134015 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 45.0 3.24e-01 100.0% 41.9%
3551723 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.53 41.0 2.98e-01 89.8% 55.0%
3422222 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 45.0 3.40e-01 98.0% 65.0%
3932304 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.03e-01 93.9% 57.5%
3478042 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 40.0 3.18e-01 91.8% 39.2%
3412743 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.36e-01 91.8% 50.0%
3253973 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 2.92e-01 93.9% 36.5%
3571958 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.51 39.0 3.24e-01 98.0% 44.3%
4953226 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 38.0 3.53e-01 83.7% 63.1%
3263391 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 37.0 3.01e-01 81.6% 39.1%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.51 40.0 3.75e-01 91.8% 70.8%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 42.0 3.64e-01 91.8% 60.0%
3438369 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 34.0 2.73e-01 71.4% 100.0%
3439646 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.50 40.0 3.22e-01 91.8% 57.1%
4015435 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.50 42.0 3.52e-01 100.0% 83.2%