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OP172671.1__WAX07068.1__BF503P2_00063__00063
Bact-VirOP172671.1__WAX07068.1__BF503P2_00063__00063
Identity
- Accession:
- OP172671 ↗
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-39
D2
high
residues 61-127
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.66 | 46.0 | 4.81e-01 | 80.6% | 81.7% |
| 2vd3A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 46.0 | 4.50e-01 | 79.1% | 93.2% |
| 1b33N01 | 3.30.1490.170 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) | 0.61 | 44.0 | 4.81e-01 | 77.6% | 94.5% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 50.0 | 4.29e-01 | 100.0% | 87.2% |
| 1y7xA01 | 2.30.30.550 | Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat | 0.57 | 38.0 | 4.38e-01 | 79.1% | 100.0% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.83e-01 | 76.1% | 92.6% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.56 | 41.0 | 3.43e-01 | 79.1% | 94.3% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 38.0 | 3.73e-01 | 74.6% | 100.0% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 40.0 | 3.86e-01 | 80.6% | 68.4% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 35.0 | 3.20e-01 | 77.6% | 45.4% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.55 | 46.0 | 3.14e-01 | 98.5% | 90.4% |
| 4dyoA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.54 | 42.0 | 3.28e-01 | 82.1% | 69.1% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 44.0 | 4.00e-01 | 100.0% | 89.3% |
| 1e40A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 42.0 | 2.74e-01 | 94.0% | 23.2% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.53 | 41.0 | 3.04e-01 | 89.6% | 29.4% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.96e-01 | 79.1% | 92.5% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.53 | 38.0 | 3.60e-01 | 76.1% | 72.0% |
| 3kzhB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 41.0 | 2.75e-01 | 89.6% | 49.7% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 40.0 | 3.78e-01 | 85.1% | 98.8% |
| 7dvbA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 39.0 | 2.55e-01 | 85.1% | 60.8% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 43.0 | 2.87e-01 | 97.0% | 50.2% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.28e-01 | 77.6% | 83.8% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 42.0 | 4.29e-01 | 100.0% | 89.6% |
| 3mc2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 36.0 | 2.81e-01 | 76.1% | 47.1% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.52 | 38.0 | 3.87e-01 | 79.1% | 96.8% |
| 4oj8B00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.52 | 41.0 | 2.83e-01 | 92.5% | 55.0% |
| 1wltA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 41.0 | 3.14e-01 | 100.0% | 35.8% |
| 2p1mB02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.50 | 39.0 | 2.37e-01 | 89.6% | 97.2% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 2.50e-01 | 94.0% | 90.4% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.64 | 40.0 | 4.52e-01 | 79.1% | 86.0% |
| 4886584 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.63 | 44.0 | 4.39e-01 | 80.6% | 70.0% |
| 4642338 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.63 | 44.0 | 4.83e-01 | 79.1% | 94.3% |
| 3507255 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.63 | 47.0 | 4.53e-01 | 79.1% | 100.0% |
| 4030871 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.63 | 44.0 | 4.37e-01 | 80.6% | 70.0% |
| 2794885 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.63 | 44.0 | 4.53e-01 | 77.6% | 78.1% |
| 4929776 | 3115.5.1.0 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB | 0.62 | 44.0 | 4.39e-01 | 79.1% | 72.9% |
| 3729534 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 45.0 | 3.61e-01 | 82.1% | 49.0% |
| 4984256 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.60 | 43.0 | 2.78e-01 | 76.1% | 78.5% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 44.0 | 3.31e-01 | 79.1% | 35.9% |
| 3686997 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.60 | 42.0 | 4.24e-01 | 76.1% | 95.7% |
| 5023213 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 42.0 | 4.23e-01 | 76.1% | 98.6% |
| 4996340 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 42.0 | 4.02e-01 | 76.1% | 100.0% |
| 1942603 | 12.1.1.22 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C | 0.59 | 40.0 | 3.46e-01 | 80.6% | 44.0% |
| 1844216 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.58 | 38.0 | 4.10e-01 | 74.6% | 86.3% |
| 4949196 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.57 | 42.0 | 4.37e-01 | 79.1% | 95.0% |
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.57 | 44.0 | 3.64e-01 | 86.6% | 94.7% |
| 1145963 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.57 | 41.0 | 3.65e-01 | 77.6% | 60.0% |
| 2124201 | 220.3.1.2 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Baculo_gp64 | 0.57 | 41.0 | 3.21e-01 | 79.1% | 99.4% |
| 3593966 | 1116.1.1.0 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain | 0.57 | 47.0 | 3.44e-01 | 97.0% | 56.7% |
| 5056500 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 45.0 | 4.27e-01 | 92.5% | 97.6% |
| 4961375 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.56 | 41.0 | 3.32e-01 | 79.1% | 100.0% |
| 4978692 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.56 | 42.0 | 2.84e-01 | 85.1% | 47.2% |
| 4963357 | 304.8.1.124 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › HVO_2525_N | 0.56 | 39.0 | 3.25e-01 | 76.1% | 100.0% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.55 | 36.0 | 4.14e-01 | 74.6% | 95.8% |
| 3164326 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 39.0 | 3.81e-01 | 76.1% | 100.0% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.54 | 40.0 | 4.09e-01 | 79.1% | 87.7% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.54 | 41.0 | 4.03e-01 | 80.6% | 76.1% |
| 4129069 | 887.1.1.1 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 | 0.54 | 38.0 | 3.66e-01 | 76.1% | 74.7% |
| 2390534 | 2002.1.1.139 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE | 0.53 | 43.0 | 2.92e-01 | 92.5% | 84.0% |
| 3738363 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 38.0 | 3.14e-01 | 76.1% | 59.2% |
| 3515122 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.53 | 44.0 | 3.63e-01 | 98.5% | 76.3% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 38.0 | 3.63e-01 | 79.1% | 67.5% |
| 3593735 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.53 | 37.0 | 3.82e-01 | 77.6% | 100.0% |
| 4945777 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.53 | 41.0 | 2.59e-01 | 91.0% | 84.0% |
| 3506716 | 10.30.1.1 ↗ | beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain › Gal_Lectin | 0.52 | 37.0 | 3.18e-01 | 76.1% | 67.0% |
| 4978332 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.52 | 38.0 | 3.61e-01 | 79.1% | 98.8% |
| 4013619 | 887.1.1.0 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e | 0.52 | 37.0 | 3.50e-01 | 76.1% | 73.8% |
| 2774914 | 887.1.1.1 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 | 0.51 | 36.0 | 3.21e-01 | 76.1% | 58.4% |
| 5063784 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 43.0 | 3.21e-01 | 98.5% | 63.8% |
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.50 | 35.0 | 3.84e-01 | 76.1% | 98.0% |