←Back to structures

OP172672.1__WAX07087.1__BF503P4_00019__00019

Bact-Vir

OP172672.1__WAX07087.1__BF503P4_00019__00019

Identity

Accession:
OP172672 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacteroides_phage_BF503P4

TaxID: 2968555

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-54
PDB
Domain cluster: representative
D2 medium residues 55-215
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00030__D13-183
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 34.0 4.88e-01 78.3% 98.6%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 40.0 5.00e-01 97.5% 93.9%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.67 39.0 4.59e-01 75.8% 80.2%
1xwmA00 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 44.0 4.02e-01 100.0% 50.5%
4mk3A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 38.0 4.41e-01 74.5% 80.0%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 38.0 4.60e-01 77.6% 89.6%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.61 26.0 3.15e-01 72.0% 56.9%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 41.0 4.44e-01 97.5% 81.5%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 38.0 4.48e-01 77.0% 91.1%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 40.0 4.49e-01 100.0% 86.5%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 39.0 4.47e-01 78.3% 93.1%
3c1yA02 1.20.1260.110 Mainly Alpha › Up-down Bundle › Ferritin › DNA integrity scanning linker region 0.58 47.0 4.89e-01 98.1% 92.6%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 4.10e-01 93.2% 62.9%
2e9xB02 1.20.58.1020 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 35.0 4.20e-01 81.4% 92.7%
4hyqA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 47.0 4.12e-01 88.8% 76.7%
2zm5B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 4.26e-01 92.5% 71.3%
7br2D01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 45.0 4.09e-01 87.6% 75.1%
3kvnA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 46.0 3.72e-01 90.7% 68.3%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 36.0 4.23e-01 78.3% 95.6%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 43.0 3.72e-01 83.9% 75.9%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 33.0 3.43e-01 94.4% 64.6%
3ckcA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 48.0 4.31e-01 96.3% 99.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 31.0 3.82e-01 74.5% 90.9%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.53 38.0 3.68e-01 80.1% 65.0%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.83e-01 81.4% 76.6%
4nk4F00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 41.0 3.58e-01 97.5% 53.3%
2ehdA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.94e-01 90.7% 68.1%
3skvA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 43.0 4.07e-01 92.5% 78.5%
1hcuC00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 45.0 3.21e-01 97.5% 33.4%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 43.0 3.97e-01 95.0% 70.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947723 2004.1.1.202 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 0.73 68.0 6.16e-01 100.0% 75.7%
3430175 601.4.1.68 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › Rx_N 0.72 43.0 4.60e-01 100.0% 67.1%
5028978 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.71 60.0 5.54e-01 95.7% 70.2%
4941164 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.68 39.0 3.58e-01 77.0% 43.9%
3392594 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 42.0 5.04e-01 100.0% 92.7%
3585163 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 40.0 4.88e-01 95.7% 91.4%
3825046 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.66 42.0 4.41e-01 96.9% 70.3%
4300897 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.66 30.0 3.37e-01 81.4% 53.8%
4933055 604.40.1.0 ↗ alpha bundles › Spectrin repeat-like › Predicted bacterial vitamin B12 uptake system BtuM › Predicted bacterial vitamin B12 uptake system BtuM 0.63 51.0 4.87e-01 84.5% 88.6%
4573455 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.63 55.0 5.20e-01 95.7% 78.5%
3706812 603.1.1.17 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE 0.63 48.0 3.90e-01 78.3% 73.9%
3650596 603.1.1.61 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Mito_carr 0.60 41.0 4.86e-01 80.1% 100.0%
4952342 7011.1.1.0 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.60 52.0 4.07e-01 92.5% 84.8%
5041482 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 31.0 4.06e-01 82.0% 88.4%
4946728 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 52.0 4.75e-01 98.8% 74.8%
3617829 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 43.0 4.81e-01 97.5% 100.0%
2772173 2007.1.11.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains › Arabinose_Isome 0.56 51.0 4.96e-01 97.5% 90.3%
2772492 2007.1.11.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains › Arabinose_Isome 0.56 51.0 4.94e-01 97.5% 89.7%
3487250 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.56 36.0 3.72e-01 98.8% 68.0%
3907025 604.1.1.92 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 0.55 43.0 4.57e-01 98.1% 89.7%
3503333 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 45.0 4.43e-01 100.0% 78.9%
3896730 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 44.0 4.80e-01 100.0% 100.0%
3514217 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.53 29.0 3.80e-01 83.2% 92.6%
3941389 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 42.0 4.55e-01 98.8% 96.4%
4995790 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.53 46.0 3.90e-01 96.9% 87.9%
3577231 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 43.0 4.48e-01 100.0% 95.3%
3649075 604.1.1.100 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › NET2A_C 0.50 46.0 4.46e-01 100.0% 88.6%