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OP172672.1__WAX07115.1__BF503P4_00047__00047
Bact-VirOP172672.1__WAX07115.1__BF503P4_00047__00047
Identity
- Accession:
- OP172672 ↗
- Kingdom:
- phage
Quality
94.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-40_82-145
Domain cluster:
rep: FR823450.1__CBZ42193.1__X__00026__D97-182
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cjjA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 36.0 | 4.42e-01 | 90.3% | 92.1% |
| 2ob9A00 | 3.30.2220.20 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like | 0.59 | 47.0 | 4.67e-01 | 91.3% | 84.1% |
| 2hqtK00 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 34.0 | 3.25e-01 | 93.2% | 51.3% |
| 1jswA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 39.0 | 3.58e-01 | 75.7% | 63.5% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.54 | 35.0 | 3.78e-01 | 73.8% | 77.0% |
| 4aihF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.72e-01 | 100.0% | 67.8% |
| 3owaA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 34.0 | 3.16e-01 | 94.2% | 49.3% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 38.0 | 3.52e-01 | 75.7% | 100.0% |
| 2ajrA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 39.0 | 2.95e-01 | 80.6% | 33.6% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 39.0 | 3.67e-01 | 79.6% | 94.4% |
| 2lpbA00 | 1.10.287.2920 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 32.0 | 3.53e-01 | 72.8% | 80.2% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 35.0 | 3.71e-01 | 92.2% | 86.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3975686 | 6050.1.1.2 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_2 | 0.62 | 51.0 | 5.16e-01 | 91.3% | 100.0% |
| 4537543 | 3103.1.1.4 ↗ | alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 | 0.57 | 51.0 | 4.79e-01 | 98.1% | 96.8% |
| 3570625 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.57 | 45.0 | 4.79e-01 | 95.1% | 97.8% |
| 3947952 | 3103.1.1.3 ↗ | alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_15 | 0.57 | 49.0 | 5.00e-01 | 96.1% | 100.0% |
| 3281310 | 235.1.1.19 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 | 0.56 | 40.0 | 3.24e-01 | 74.8% | 83.3% |
| 5031415 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.55 | 40.0 | 3.65e-01 | 76.7% | 93.5% |
| 5075442 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.54 | 41.0 | 3.68e-01 | 80.6% | 94.5% |
| 3953085 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.54 | 42.0 | 2.90e-01 | 87.4% | 74.9% |
| 5082139 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 39.0 | 3.70e-01 | 79.6% | 92.0% |
| 3924284 | 2484.1.1.175 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C | 0.52 | 40.0 | 2.55e-01 | 80.6% | 55.0% |
| 3924951 | 609.1.1.1 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg | 0.51 | 42.0 | 3.85e-01 | 98.1% | 67.9% |
| 4382271 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.50 | 39.0 | 3.01e-01 | 81.6% | 77.4% |
| 4558236 | 2004.1.1.71 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT | 0.50 | 38.0 | 3.05e-01 | 80.6% | 89.5% |
D2
high
residues 201-254
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rfwA01 | 1.10.8.1040 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.83 | 69.0 | 6.62e-01 | 88.9% | 96.7% |
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.80 | 49.0 | 5.54e-01 | 72.2% | 82.9% |
| 2gwlA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.76 | 65.0 | 4.30e-01 | 92.6% | 56.0% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 57.0 | 5.59e-01 | 79.6% | 75.4% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 54.0 | 3.83e-01 | 75.9% | 62.7% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.70 | 54.0 | 4.49e-01 | 83.3% | 74.2% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.69 | 51.0 | 3.63e-01 | 90.7% | 27.5% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.66 | 47.0 | 3.51e-01 | 92.6% | 32.5% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.66 | 51.0 | 4.46e-01 | 87.0% | 82.4% |
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.64 | 58.0 | 3.78e-01 | 100.0% | 35.8% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.63 | 43.0 | 4.57e-01 | 74.1% | 84.8% |
| 3q9oA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.62 | 47.0 | 3.40e-01 | 85.2% | 31.7% |
| 6xm1A02 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.60 | 52.0 | 4.13e-01 | 98.1% | 57.5% |
| 4l22A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 53.0 | 3.12e-01 | 100.0% | 29.4% |
| 5cehA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.56 | 45.0 | 2.81e-01 | 87.0% | 20.9% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.52 | 39.0 | 3.32e-01 | 81.5% | 51.6% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 42.0 | 3.16e-01 | 90.7% | 48.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959470 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.66 | 47.0 | 3.63e-01 | 75.9% | 35.0% |
| 3904078 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 47.0 | 4.30e-01 | 79.6% | 71.2% |
| 5021128 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.64 | 46.0 | 3.55e-01 | 77.8% | 34.4% |
| 1395085 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.63 | 57.0 | 3.70e-01 | 100.0% | 35.8% |
D3
medium
residues 146-195
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.86 | 70.0 | 7.14e-01 | 88.0% | 93.8% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 74.0 | 6.99e-01 | 98.0% | 96.6% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 74.0 | 6.43e-01 | 98.0% | 82.2% |
| 4fxxB01 | 6.10.140.1790 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 70.0 | 6.11e-01 | 92.0% | 93.1% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.79 | 63.0 | 5.61e-01 | 88.0% | 66.2% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 64.0 | 4.16e-01 | 96.0% | 25.2% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 63.0 | 5.86e-01 | 96.0% | 89.2% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.74 | 62.0 | 5.14e-01 | 100.0% | 62.9% |
| 2g2dA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.74 | 61.0 | 4.31e-01 | 94.0% | 33.1% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 61.0 | 5.36e-01 | 96.0% | 69.2% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.72 | 55.0 | 5.50e-01 | 88.0% | 88.5% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 62.0 | 4.94e-01 | 100.0% | 55.8% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 59.0 | 5.21e-01 | 96.0% | 62.2% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.70 | 61.0 | 4.39e-01 | 98.0% | 74.3% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 56.0 | 4.47e-01 | 96.0% | 58.9% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.69 | 53.0 | 4.97e-01 | 82.0% | 68.3% |
| 3k6qA02 | 3.30.160.620 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 53.0 | 4.40e-01 | 86.0% | 79.8% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 53.0 | 4.27e-01 | 92.0% | 53.2% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 55.0 | 4.46e-01 | 100.0% | 58.3% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 52.0 | 5.22e-01 | 86.0% | 96.2% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.67 | 53.0 | 5.06e-01 | 92.0% | 83.6% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.64 | 51.0 | 4.87e-01 | 98.0% | 85.9% |
| 2ch5B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 49.0 | 3.26e-01 | 84.0% | 51.5% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.63 | 54.0 | 3.61e-01 | 98.0% | 93.3% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.26e-01 | 78.0% | 85.7% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.59 | 45.0 | 3.03e-01 | 84.0% | 27.2% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 41.0 | 3.76e-01 | 82.0% | 86.6% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.51 | 38.0 | 2.89e-01 | 88.0% | 87.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3384920 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.89 | 61.0 | 6.77e-01 | 72.0% | 100.0% |
| 4638458 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.84 | 73.0 | 6.68e-01 | 96.0% | 80.0% |
| 4009623 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 73.0 | 6.65e-01 | 98.0% | 84.6% |
| 3930836 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.82 | 71.0 | 5.30e-01 | 96.0% | 43.3% |
| 4179648 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.82 | 70.0 | 6.40e-01 | 94.0% | 82.8% |
| 4667987 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.81 | 70.0 | 6.45e-01 | 94.0% | 77.8% |
| 3381592 | 2486.1.1.6 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ACCA | 0.81 | 72.0 | 4.30e-01 | 98.0% | 77.9% |
| 3258522 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.80 | 64.0 | 5.81e-01 | 86.0% | 84.6% |
| 4395525 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.78 | 68.0 | 6.22e-01 | 96.0% | 80.0% |
| 4961031 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 65.0 | 5.87e-01 | 96.0% | 82.9% |
| 4216245 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.75 | 57.0 | 5.95e-01 | 84.0% | 97.8% |
| 3237264 | 3755.4.1.82 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Snf7 | 0.70 | 54.0 | 4.14e-01 | 90.0% | 39.2% |
| 3433847 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.64 | 50.0 | 3.16e-01 | 90.0% | 15.2% |