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OP172685.1__WAX07824.1__BK687P5_00009__00009

Bact-Vir

OP172685.1__WAX07824.1__BK687P5_00009__00009

Identity

Accession:
OP172685 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 220-282
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.15e-01 82.5% 93.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.86e-01 84.1% 83.9%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.74 67.0 5.18e-01 100.0% 86.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.73 59.0 5.59e-01 100.0% 74.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 4.88e-01 82.5% 70.2%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 5.58e-01 90.5% 91.7%
4jxkA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.68 52.0 3.84e-01 82.5% 61.7%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 4.78e-01 84.1% 88.7%
1o89A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.66 51.0 3.87e-01 84.1% 62.7%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 53.0 4.29e-01 92.1% 72.5%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 3.37e-01 71.4% 36.9%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.90e-01 100.0% 100.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.66e-01 92.1% 86.3%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.02e-01 100.0% 84.7%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 3.20e-01 73.0% 95.1%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.42e-01 76.2% 23.3%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.58e-01 76.2% 58.7%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.37e-01 87.3% 81.3%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.44e-01 77.8% 63.3%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.52e-01 71.4% 16.2%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 38.0 2.95e-01 73.0% 88.4%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 43.0 3.48e-01 87.3% 77.5%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 3.77e-01 93.7% 96.4%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.54 41.0 4.01e-01 84.1% 82.6%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 40.0 3.81e-01 87.3% 74.7%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 36.0 2.95e-01 76.2% 73.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 43.0 3.01e-01 93.7% 56.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.57e-01 85.7% 91.1%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 39.0 3.02e-01 92.1% 95.4%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.51 39.0 3.24e-01 92.1% 91.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3698096 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.80 64.0 4.52e-01 85.7% 45.6%
3497683 4.1.1.309 beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.78 71.0 5.27e-01 100.0% 50.7%
5036729 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.76 59.0 4.75e-01 84.1% 60.8%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.73 58.0 5.32e-01 84.1% 77.5%
3833012 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.72 60.0 5.38e-01 88.9% 72.9%
4984882 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 64.0 6.22e-01 100.0% 92.9%
3339162 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.71 60.0 4.67e-01 92.1% 86.2%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.71 58.0 5.50e-01 88.9% 92.0%
3706000 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 57.0 5.38e-01 87.3% 94.7%
3931715 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 52.0 4.42e-01 79.4% 96.0%
3354076 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.69 61.0 4.76e-01 96.8% 87.7%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.69 56.0 4.45e-01 87.3% 45.8%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.68 52.0 5.11e-01 84.1% 82.9%
3476336 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 55.0 5.32e-01 87.3% 91.4%
3827886 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.67 58.0 5.35e-01 95.2% 88.7%
5037634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 52.0 4.75e-01 87.3% 95.3%
3700770 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.50e-01 93.7% 96.7%
5037223 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.65 44.0 4.53e-01 79.4% 73.3%
5036890 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 47.0 3.80e-01 79.4% 95.2%
4653627 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.63 44.0 3.26e-01 73.0% 45.5%
3504499 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.63 44.0 2.86e-01 74.6% 24.1%
3696171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 3.40e-01 100.0% 47.5%
4416756 11.46.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C-domain of Mg adhesin P110 › C-domain of Mg adhesin P110 0.62 43.0 3.52e-01 73.0% 70.8%
3214131 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.97e-01 96.8% 83.7%
3673944 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 55.0 4.19e-01 100.0% 56.4%
3210897 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.59e-01 90.5% 76.5%
3612838 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 47.0 4.19e-01 82.5% 88.9%
3836393 9.2.1.2 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.62 48.0 3.49e-01 87.3% 85.3%
3589263 2.1.1.222 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_YrrC 0.61 44.0 4.14e-01 79.4% 100.0%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 47.0 4.56e-01 87.3% 88.6%
3740052 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.59 46.0 3.86e-01 88.9% 69.2%
3563416 5095.1.1.0 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.59 40.0 4.05e-01 73.0% 93.8%
5025916 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 3.74e-01 93.7% 64.1%
3223466 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 41.0 2.51e-01 73.0% 21.1%
3187356 2484.1.1.223 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27036 0.57 44.0 3.11e-01 82.5% 46.8%
3591158 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.39e-01 81.0% 68.0%
3496357 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.55 38.0 2.53e-01 73.0% 29.5%
4939270 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.55 38.0 3.46e-01 71.4% 69.4%
3297150 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.50e-01 79.4% 72.0%
3894035 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 38.0 2.36e-01 76.2% 22.7%
4021411 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.55 42.0 3.49e-01 84.1% 68.7%
4972821 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.55 38.0 3.09e-01 73.0% 47.5%
3665093 109.4.1.338 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.54 37.0 2.29e-01 71.4% 20.8%
4492826 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 43.0 3.53e-01 85.7% 47.0%
4260969 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 37.0 2.97e-01 73.0% 83.7%
3279764 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.89e-01 84.1% 72.9%
3313853 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 40.0 2.51e-01 88.9% 61.0%
5025077 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.52 36.0 3.69e-01 73.0% 100.0%
3659855 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.67e-01 85.7% 98.8%
3715664 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.50 39.0 3.15e-01 85.7% 76.2%
3458331 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.50 42.0 2.84e-01 96.8% 75.4%
D2 medium residues 4-121
PDB
D3 medium residues 128-212
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.80 53.0 5.62e-01 74.1% 75.3%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 4.63e-01 75.3% 85.7%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.74 55.0 5.00e-01 77.6% 62.4%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.12e-01 71.8% 83.8%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.77e-01 72.9% 78.9%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.98e-01 76.5% 93.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 5.22e-01 75.3% 100.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.67e-01 83.5% 79.0%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 41.0 3.49e-01 74.1% 85.4%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 40.0 3.42e-01 72.9% 88.3%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.56 39.0 3.39e-01 74.1% 72.2%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.09e-01 89.4% 96.1%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 36.0 2.86e-01 74.1% 35.3%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 35.0 3.60e-01 72.9% 81.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389175 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 55.0 5.43e-01 74.1% 64.4%
3924213 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 55.0 5.30e-01 74.1% 61.1%
3230082 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 54.0 5.09e-01 74.1% 57.0%
3516048 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 55.0 5.17e-01 77.6% 58.0%
3504417 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 54.0 5.33e-01 77.6% 65.6%
3482359 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 61.0 5.56e-01 80.0% 91.8%
3198731 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.78 51.0 4.32e-01 76.5% 43.1%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 53.0 5.24e-01 74.1% 66.7%
3884131 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 55.0 4.94e-01 74.1% 64.3%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.21e-01 71.8% 95.3%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 52.0 4.26e-01 74.1% 58.6%
3487837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 51.0 3.78e-01 74.1% 45.5%
3790010 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 51.0 4.85e-01 75.3% 87.0%
5052257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 45.0 5.30e-01 70.6% 93.3%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.99e-01 71.8% 81.2%
3214131 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 48.0 5.03e-01 72.9% 87.5%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 45.0 3.86e-01 70.6% 43.8%
3624930 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.52e-01 75.3% 79.1%
3645373 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.09e-01 74.1% 74.8%
4932493 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 5.46e-01 81.2% 96.9%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.60e-01 70.6% 76.5%
3625264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.71e-01 77.6% 76.8%
5034090 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 49.0 4.00e-01 89.4% 80.6%
4037619 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 44.0 4.43e-01 92.9% 85.9%
3773064 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 45.0 2.72e-01 100.0% 39.7%