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OP172704.1__WAX08733.1__BP677P8_00046__00046

Bact-Vir

OP172704.1__WAX08733.1__BP677P8_00046__00046

Identity

Accession:
OP172704 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.69 59.0 5.80e-01 100.0% 86.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.67 58.0 5.65e-01 100.0% 86.2%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.64 57.0 4.04e-01 100.0% 70.0%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 55.0 5.23e-01 100.0% 89.0%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.62 42.0 4.55e-01 89.7% 84.0%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.60 51.0 4.21e-01 96.9% 91.9%
2d0oB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.60 50.0 4.89e-01 96.9% 84.3%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 38.0 3.68e-01 82.5% 57.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.59 50.0 4.37e-01 92.8% 78.8%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 51.0 4.77e-01 97.9% 94.3%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.58 36.0 4.27e-01 90.7% 92.3%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 38.0 3.16e-01 75.3% 38.8%
1fgsA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 49.0 3.56e-01 99.0% 78.5%
2pb2B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 48.0 4.26e-01 100.0% 65.5%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 4.04e-01 95.9% 78.6%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.55 49.0 4.80e-01 97.9% 93.2%
2epjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 47.0 3.98e-01 100.0% 60.2%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.54 47.0 4.00e-01 97.9% 100.0%
6k8hA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 48.0 3.93e-01 99.0% 58.4%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 40.0 3.30e-01 78.4% 89.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 48.0 4.23e-01 100.0% 71.8%
4emyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.50e-01 99.0% 48.2%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 48.0 3.93e-01 99.0% 58.5%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.82e-01 99.0% 57.9%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 3.04e-01 89.7% 94.8%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.64e-01 83.5% 97.0%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.70e-01 99.0% 61.4%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 34.0 3.03e-01 90.7% 45.8%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.73e-01 91.8% 82.1%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.51 42.0 3.89e-01 93.8% 95.4%
4q6rA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.95e-01 100.0% 70.2%
4uulA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.51 37.0 3.08e-01 78.4% 45.6%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 40.0 3.00e-01 87.6% 91.6%
3bu2A02 3.30.1940.10 Alpha Beta › 2-Layer Sandwich › Nucleic acid-binding protein fold › YtpR-like 0.50 28.0 3.24e-01 73.2% 76.8%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971431 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.74 57.0 6.10e-01 97.9% 95.2%
4954638 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.71 66.0 6.26e-01 100.0% 90.4%
4928574 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.70 58.0 6.09e-01 99.0% 100.0%
3839444 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.69 63.0 5.87e-01 100.0% 88.3%
223484 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.69 59.0 5.80e-01 100.0% 86.7%
4033928 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.68 61.0 5.63e-01 99.0% 79.2%
4515677 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.68 60.0 5.76e-01 100.0% 84.2%
4143716 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.67 60.0 5.75e-01 100.0% 86.4%
5044949 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.67 60.0 5.58e-01 99.0% 92.5%
3970136 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.66 59.0 5.75e-01 100.0% 91.4%
4979253 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.66 59.0 5.72e-01 100.0% 88.2%
5074509 241.11.1.7 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF3788 0.66 60.0 5.34e-01 100.0% 85.2%
3965099 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.65 57.0 5.62e-01 100.0% 89.5%
4269649 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.65 58.0 5.60e-01 100.0% 87.3%
3288945 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.65 57.0 5.59e-01 99.0% 89.5%
1150630 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.65 59.0 5.41e-01 100.0% 79.8%
3581854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 40.0 4.13e-01 75.3% 67.8%
6642 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.62 55.0 5.23e-01 100.0% 89.0%
3941694 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.62 55.0 5.29e-01 97.9% 90.9%
3240324 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 42.0 3.43e-01 72.2% 39.4%
3733997 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.61 53.0 4.90e-01 96.9% 91.2%
3438388 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.60 48.0 4.31e-01 88.7% 61.5%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.60 41.0 4.57e-01 86.6% 92.0%
4995507 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.60 40.0 4.45e-01 88.7% 88.0%
4304648 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.60 50.0 5.10e-01 93.8% 92.6%
2162624 3894.1.1.1 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.59 48.0 4.39e-01 86.6% 69.8%
3960569 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 43.0 4.36e-01 74.2% 93.7%
5065809 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.59 50.0 4.26e-01 92.8% 56.2%
3470353 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.59 40.0 3.65e-01 71.1% 52.3%
4946710 876.1.1.0 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.58 41.0 4.59e-01 93.8% 96.0%
4965302 7089.1.1.8 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › PF25912 0.57 40.0 4.18e-01 73.2% 82.2%
5041419 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.57 38.0 4.16e-01 94.8% 82.5%
5025174 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.57 38.0 4.41e-01 96.9% 94.3%
4928161 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 44.0 4.38e-01 81.4% 86.0%
5067143 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 47.0 4.47e-01 100.0% 79.1%
3487629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.55e-01 73.2% 52.6%
3630385 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.56 46.0 4.38e-01 88.7% 90.4%
5021241 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.56 35.0 4.07e-01 88.7% 88.6%
4169291 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 50.0 4.90e-01 99.0% 99.0%
2161921 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 43.0 4.50e-01 91.8% 96.5%
4110222 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 48.0 4.60e-01 95.9% 91.8%
4031135 6043.1.1.3 a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.55 33.0 3.51e-01 84.5% 68.2%
3574066 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.55 36.0 2.96e-01 95.9% 34.6%
5018904 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.55 40.0 3.18e-01 83.5% 37.9%
4334138 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 47.0 4.59e-01 95.9% 96.2%
2541709 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 48.0 4.62e-01 100.0% 91.9%
3991735 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.54 45.0 4.26e-01 89.7% 94.8%
5035266 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.54 40.0 4.22e-01 87.6% 91.6%
1693723 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 47.0 4.59e-01 100.0% 94.5%
4047958 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 48.0 4.73e-01 99.0% 99.0%
4230466 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 47.0 4.52e-01 100.0% 98.2%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.53 31.0 1.92e-01 80.4% 9.1%
3271694 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.53 45.0 3.35e-01 91.8% 43.0%
5003057 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 35.0 4.10e-01 90.7% 95.7%
4174846 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.53 34.0 3.52e-01 89.7% 67.4%
4936682 243.6.1.8 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.53 37.0 3.96e-01 93.8% 83.5%
3222725 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 41.0 2.83e-01 84.5% 26.3%
3284448 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.52 41.0 3.29e-01 83.5% 60.0%
5035335 298.1.1.42 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA 0.52 43.0 2.95e-01 93.8% 29.4%
3744768 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 40.0 3.74e-01 83.5% 91.7%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.51 40.0 3.06e-01 86.6% 61.2%
5001279 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.50 42.0 2.93e-01 93.8% 34.0%
3740947 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.50 43.0 3.00e-01 100.0% 86.6%