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OP172705.1__WAX08737.1__BP742P1_00004__00004

Bact-Vir

OP172705.1__WAX08737.1__BP742P1_00004__00004

Identity

Accession:
OP172705 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-43_109-126
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.20e-01 93.4% 97.3%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.64 55.0 5.40e-01 96.7% 100.0%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 35.0 3.71e-01 70.5% 60.0%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 35.0 3.54e-01 88.5% 54.1%
1gwiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 49.0 3.07e-01 100.0% 45.8%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.59 40.0 2.56e-01 70.5% 32.8%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.04e-01 86.9% 75.8%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.56 40.0 3.86e-01 98.4% 65.3%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.58e-01 85.2% 66.3%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 38.0 2.63e-01 72.1% 97.5%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 36.0 3.36e-01 70.5% 92.9%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 3.02e-01 85.2% 99.5%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.54 42.0 4.31e-01 83.6% 100.0%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.52 39.0 4.00e-01 82.0% 82.0%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.50 34.0 3.32e-01 70.5% 100.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3464388 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.67 58.0 4.79e-01 100.0% 56.5%
2779254 632.3.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyx_P_V_C 0.64 34.0 3.45e-01 70.5% 50.8%
3458166 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 48.0 4.85e-01 83.6% 96.7%
3928911 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 34.0 3.28e-01 88.5% 57.1%
4562953 2004.1.1.43 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.53 40.0 2.64e-01 83.6% 35.4%
5034998 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.52 43.0 4.20e-01 88.5% 86.2%
3870171 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.51 39.0 3.79e-01 88.5% 92.9%
4311347 604.24.1.0 alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins 0.51 41.0 3.80e-01 90.2% 81.2%
D2 medium residues 44-108
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 59.0 5.76e-01 73.8% 71.8%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.83 61.0 4.35e-01 76.9% 30.9%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.82 58.0 5.66e-01 73.8% 69.0%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.81 63.0 4.24e-01 83.1% 24.8%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.80 57.0 4.19e-01 75.4% 31.7%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 58.0 5.48e-01 78.5% 70.1%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.77 69.0 6.27e-01 98.5% 81.6%
2jvgA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.76 51.0 4.94e-01 72.3% 62.5%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 51.0 4.99e-01 72.3% 69.4%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 55.0 5.01e-01 78.5% 65.1%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 54.0 4.12e-01 78.5% 34.8%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.73 54.0 4.31e-01 78.5% 62.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 53.0 5.04e-01 76.9% 74.0%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 52.0 3.55e-01 75.4% 22.9%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.73 58.0 4.34e-01 86.2% 97.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.71 48.0 5.36e-01 75.4% 95.8%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.71 55.0 5.32e-01 84.6% 74.3%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 4.63e-01 78.5% 59.8%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.70 53.0 3.53e-01 83.1% 21.6%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 51.0 4.38e-01 76.9% 52.9%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.70 49.0 5.07e-01 75.4% 86.7%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.69 55.0 4.58e-01 87.7% 53.1%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.69 47.0 4.28e-01 75.4% 52.8%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 59.0 4.91e-01 98.5% 96.6%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.68 58.0 4.73e-01 100.0% 75.0%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 51.0 4.50e-01 83.1% 55.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 47.0 4.05e-01 72.3% 47.1%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.68 52.0 3.54e-01 84.6% 23.6%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.67 46.0 3.67e-01 72.3% 39.0%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.67 48.0 4.50e-01 78.5% 61.7%
4modA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 48.0 4.59e-01 83.1% 65.8%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.63 47.0 4.46e-01 81.5% 65.8%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 43.0 4.12e-01 70.8% 64.0%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 52.0 4.81e-01 96.9% 82.8%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 44.0 4.19e-01 90.8% 62.0%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.62 43.0 3.52e-01 73.8% 66.7%
3nrgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 45.0 3.15e-01 78.5% 28.1%
3djaA01 1.20.920.70 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.60 49.0 3.91e-01 93.8% 55.2%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 46.0 4.38e-01 96.9% 69.6%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 37.0 3.48e-01 78.5% 51.9%
3k9vA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 47.0 2.82e-01 86.2% 13.6%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.57 44.0 3.87e-01 86.2% 59.8%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.26e-01 100.0% 28.3%
3r7tA02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.56 39.0 3.53e-01 86.2% 52.7%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.55 39.0 3.58e-01 76.9% 55.7%
3dkxA02 1.10.10.1480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Plasmid replication protein 0.55 37.0 3.73e-01 86.2% 69.1%
7swlB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 40.0 3.46e-01 100.0% 50.5%
7og5F01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 42.0 3.26e-01 89.2% 39.9%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 37.0 3.13e-01 75.4% 52.8%
3op7A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 43.0 3.10e-01 100.0% 99.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3229885 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.75 65.0 5.72e-01 98.5% 76.5%
5035107 3922.1.1.358 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF26119 0.75 66.0 5.46e-01 98.5% 87.7%
4993195 632.6.1.15 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 0.74 65.0 5.75e-01 98.5% 88.4%
5079025 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.73 59.0 5.80e-01 96.9% 82.9%
3216082 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 54.0 4.45e-01 96.9% 45.2%
3589446 2004.1.1.301 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.71 49.0 2.92e-01 72.3% 26.5%
3250261 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.71 61.0 5.49e-01 98.5% 68.9%
4116972 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.70 53.0 4.78e-01 84.6% 85.3%
5022284 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.69 54.0 5.24e-01 98.5% 76.0%
3868 4204.1.1.1 alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like 0.69 55.0 4.60e-01 87.7% 54.1%
3249621 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 53.0 3.32e-01 84.6% 15.1%
3831 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.68 47.0 4.05e-01 72.3% 47.1%
3286103 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.67 55.0 5.20e-01 93.8% 83.7%
3366724 605.4.1.16 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › NEPRO_N 0.66 50.0 4.15e-01 83.1% 60.0%
3819103 633.21.1.33 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › PIEZO 0.66 50.0 4.29e-01 81.5% 62.9%
3621359 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 48.0 4.41e-01 80.0% 58.8%
4022486 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.66 47.0 4.17e-01 73.8% 65.6%
3510680 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.66 50.0 4.96e-01 83.1% 97.1%
4978829 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.66 50.0 4.92e-01 83.1% 77.1%
3222435 606.1.1.1 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.64 49.0 3.68e-01 83.1% 69.7%
3494078 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 4.50e-01 72.3% 76.9%
4984270 4.1.1.481 beta barrels › SH3 › SH3 › SH3 › MS_channel_1st_1 0.63 54.0 4.70e-01 96.9% 71.0%
3719996 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 43.0 3.71e-01 73.8% 81.0%
3575378 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 45.0 3.95e-01 76.9% 58.9%
3504266 109.4.1.451 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.62 43.0 3.22e-01 73.8% 50.6%
3285873 223.1.1.36 a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD 0.61 51.0 3.66e-01 90.8% 35.0%
3269900 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.61 43.0 3.97e-01 76.9% 92.2%
4111395 3960.1.1.1 alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C 0.59 45.0 3.83e-01 81.5% 99.0%
5000777 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 46.0 4.13e-01 92.3% 86.2%
4118420 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 37.0 3.73e-01 72.3% 75.4%
3542516 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 37.0 3.21e-01 72.3% 84.8%
3692552 5071.3.1.0 alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 0.53 38.0 3.85e-01 78.5% 78.5%
5079783 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 2.62e-01 96.9% 33.5%