←Back to structures

OP172706.1__WAX08823.1__BS162P1_00044__00044

Bact-Vir

OP172706.1__WAX08823.1__BS162P1_00044__00044

Identity

Accession:
OP172706 ↗
Kingdom:
phage

Quality

68.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacteroides_phage_BS162P1

TaxID: 2968579

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-96
PDB
Domain cluster: rep: CAKLQF020000011.1__CAH1085983.1__SAMEA5780031_02231__00031__D106-155
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.84 63.0 6.27e-01 87.7% 77.6%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.83 57.0 6.47e-01 80.0% 100.0%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.83 59.0 6.62e-01 83.1% 100.0%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.79 57.0 6.28e-01 86.2% 98.0%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.74 52.0 5.72e-01 83.1% 96.0%
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.74 62.0 5.90e-01 100.0% 77.9%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.73 63.0 6.11e-01 95.4% 89.0%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 3.89e-01 90.8% 38.1%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.47e-01 86.2% 62.5%
2gu1A02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.18e-01 100.0% 60.6%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 45.0 3.64e-01 89.2% 100.0%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.62e-01 90.8% 53.1%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.91e-01 90.8% 63.7%
2zoeA00 2.170.15.20 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › 0.53 45.0 3.45e-01 100.0% 66.7%
3w1eA01 3.30.1660.40 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain 0.53 43.0 4.01e-01 98.5% 100.0%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 32.0 3.57e-01 75.4% 100.0%
1ogpA01 3.90.420.10 Alpha Beta › Alpha-Beta Complex › Sulfite Oxidase; Chain A, domain 2 › Oxidoreductase, molybdopterin-binding domain 0.51 39.0 2.69e-01 86.2% 60.2%
2ns6A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.50 41.0 3.16e-01 100.0% 61.7%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501971 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 76.0 7.93e-01 96.9% 95.0%
3426433 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 70.0 7.26e-01 89.2% 88.3%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 66.0 7.13e-01 87.7% 92.7%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 66.0 7.19e-01 89.2% 94.5%
4492966 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 68.0 7.28e-01 90.8% 98.2%
5004560 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 67.0 7.25e-01 86.2% 98.2%
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 66.0 6.98e-01 89.2% 91.4%
4177991 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 68.0 7.35e-01 89.2% 100.0%
3349612 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.85 62.0 6.94e-01 87.7% 100.0%
3324708 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 66.0 6.90e-01 90.8% 90.0%
3974521 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 67.0 6.95e-01 90.8% 90.0%
4176074 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 69.0 7.15e-01 87.7% 98.3%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 70.0 7.05e-01 100.0% 89.2%
3925474 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 62.0 6.90e-01 84.6% 100.0%
4205026 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 62.0 6.22e-01 86.2% 76.9%
3846469 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 65.0 5.81e-01 90.8% 60.0%
4149501 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 61.0 6.84e-01 84.6% 100.0%
4555777 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.83 65.0 6.35e-01 93.8% 77.1%
3337080 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.82 68.0 7.03e-01 100.0% 95.0%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 62.0 6.45e-01 89.2% 86.7%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.81 68.0 5.54e-01 100.0% 50.0%
3250641 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 58.0 6.45e-01 84.6% 98.0%
3969916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 63.0 6.17e-01 90.8% 77.1%
2042916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 59.0 6.41e-01 86.2% 94.4%
3165071 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 61.0 6.61e-01 90.8% 96.4%
3303205 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 61.0 6.37e-01 86.2% 88.3%
4047213 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 64.0 6.93e-01 84.6% 100.0%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 61.0 6.60e-01 90.8% 98.2%
2644066 101.15.1.7 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.79 62.0 5.84e-01 92.3% 71.1%
3417561 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 71.0 4.52e-01 98.5% 32.9%
3670445 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 71.0 4.47e-01 98.5% 38.4%
3821115 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.79 61.0 5.56e-01 89.2% 63.5%
2124917 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 71.0 5.22e-01 98.5% 60.2%
3691772 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 61.0 6.49e-01 90.8% 98.2%
2895417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.78 70.0 6.62e-01 100.0% 92.2%
2809236 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 62.0 6.37e-01 86.2% 90.3%
3655335 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 71.0 5.14e-01 98.5% 58.2%
3337328 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.78 72.0 4.57e-01 100.0% 29.6%
3636424 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 57.0 6.17e-01 83.1% 92.7%
4008890 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.78 62.0 6.65e-01 86.2% 100.0%
4023232 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.78 58.0 6.05e-01 84.6% 86.7%
3636417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.77 58.0 6.33e-01 86.2% 100.0%
3232962 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 64.0 6.66e-01 100.0% 98.3%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.77 62.0 6.13e-01 89.2% 84.3%
4489502 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 61.0 6.30e-01 84.6% 100.0%
3464064 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 70.0 6.38e-01 100.0% 80.0%
3422876 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 59.0 6.13e-01 83.1% 90.0%
3810505 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 67.0 4.97e-01 98.5% 58.2%
3671032 101.15.1.11 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP 0.76 67.0 4.94e-01 100.0% 38.8%
3166029 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.76 58.0 6.16e-01 86.2% 98.2%
3181142 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 55.0 6.18e-01 76.9% 100.0%
3338947 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.75 65.0 6.52e-01 100.0% 95.4%
3191020 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 57.0 5.96e-01 83.1% 88.3%
3367888 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.75 63.0 6.15e-01 90.8% 84.3%
3647286 101.15.1.7 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.75 64.0 6.10e-01 93.8% 81.3%
162111 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 62.0 5.90e-01 100.0% 77.9%
3375189 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.74 61.0 6.01e-01 95.4% 84.3%
3353525 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.74 66.0 5.29e-01 100.0% 54.4%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 66.0 4.24e-01 100.0% 50.5%
4137479 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 57.0 5.21e-01 92.3% 63.5%
3666767 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.74 60.0 5.10e-01 89.2% 61.9%
3811719 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.73 61.0 4.62e-01 90.8% 46.0%
3654876 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.73 66.0 5.16e-01 100.0% 48.1%
3691758 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.73 58.0 6.18e-01 89.2% 100.0%
3355076 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.73 57.0 5.88e-01 89.2% 91.7%
3819870 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.73 66.0 5.14e-01 100.0% 48.1%
3185732 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.72 55.0 5.87e-01 81.5% 98.2%
3319482 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.72 64.0 5.19e-01 100.0% 52.8%
3448128 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.72 65.0 5.10e-01 100.0% 48.1%
3365578 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.72 64.0 5.98e-01 100.0% 83.7%
3963519 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.72 54.0 5.48e-01 81.5% 81.5%
4491522 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.70 55.0 5.74e-01 92.3% 93.3%
None — 0.70 62.0 4.99e-01 100.0% 52.0%
3651054 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.70 62.0 4.70e-01 100.0% 45.2%
3359799 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.69 61.0 4.85e-01 100.0% 49.6%
3217973 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.68 56.0 5.48e-01 96.9% 82.9%
3838530 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.66 49.0 5.10e-01 84.6% 98.3%
1649977 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.63 49.0 4.43e-01 86.2% 61.1%
3968457 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.62 48.0 4.47e-01 87.7% 65.9%
3386481 3953.1.1.0 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain 0.60 49.0 4.30e-01 93.8% 59.0%
4053910 3953.1.1.2 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.60 47.0 4.20e-01 92.3% 59.0%
3968453 3953.1.1.2 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.59 49.0 4.11e-01 100.0% 51.7%
2774290 3953.1.1.2 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.56 46.0 4.03e-01 100.0% 58.3%
1606365 3953.1.1.0 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain 0.56 44.0 3.95e-01 100.0% 59.0%
4309279 323.1.1.12 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N 0.53 46.0 3.38e-01 98.5% 88.6%
4569098 304.18.1.0 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.52 41.0 4.05e-01 100.0% 83.8%
3968266 3536.1.1.0 ↗ a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains 0.51 39.0 3.42e-01 86.2% 54.3%
3483773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.02e-01 81.5% 87.1%